PROJECT INFORMATION
GOLD Project ID
Gp0682993  
Project Name
Brachyspira hyodysenteriae Bh743-7  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Brachyspira hyodysenteriae Bh743-7
NCBI BioProject Accession PRJNA594292
NCBI Locus Tag
GQX59  
NCBI BioSample Accession SAMN13511716
Source Sample ID
PI Unknown
Added By JGI automated process on 2022-09-29
Last Modified By JGI automated process on 2022-10-05
Project Comments
  
Project Status
Complete and Published  
Project Relevance
  
Sequencing Center University of Berne (Switzerland)
Collaborating Institute
  
Funding Agency
  
Project Description
Brachyspira hyodysenteriae Bh743-7 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX7288919  (Link to NCBI )
Experiment Title Whole genome sequence of the predominant clone of Brachyspira hyodysenteriae of sequence type ST196 in pigs in Switzerland
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection size fractionation
Library Name Bh743-7x_ONT
Library Layout SINGLE
Library Instrument MIN_ION
 
SRA Experiment Id SRX7288920  (Link to NCBI )
Experiment Title Whole genome sequence of the predominant clone of Brachyspira hyodysenteriae of sequence type ST196 in pigs in Switzerland
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection unspecified
Library Name Bh743-7x_Illumina
Library Layout PAIRED
Library Instrument ILLUMINA_NOVA_SEQ_6000
PROJECT COMPOSITION
Study Complete genome sequences of Brachyspira hyodysenteriae of different sequence types present in Switzerland
Organism Brachyspira hyodysenteriae Bh743-7
Analysis Projects Brachyspira hyodysenteriae Bh743-7
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Oxford Nanopore MinION +
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0646928
Organism Name
Brachyspira hyodysenteriae Bh743-7  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
SPIROCHAETOTA  
Genus
Brachyspira  
Genus Synonyms
  
Species
Brachyspira hyodysenteriae  
Subspecies
  
Species Synonyms
  
Strain
Bh743-7  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 159
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Spirochaetota  
NCBI Class
Spirochaetia  
NCBI Order
Brachyspirales  
NCBI Family
Brachyspiraceae  
NCBI Genus
Brachyspira  
NCBI Species
Brachyspira hyodysenteriae  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mammals  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Large intestine  
Specific Ecosystem
Fecal  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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