PROJECT INFORMATION
GOLD Project ID
Gp0678310  
Project Name
Pyrococcus furiosus DSM 3638  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Pyrococcus furiosus DSM 3638 VC1
NCBI BioProject Accession PRJNA382684
NCBI Locus Tag
PFDSM3638  
NCBI BioSample Accession SAMN06711904
PI Unknown
Added By JGI automated process on 2022-09-26
Last Modified By JGI automated process on 2022-09-28
Project Comments
  
Project Status
Complete and Published  
Project Relevance Model Organism
Sequencing Center University of Regensburg
Collaborating Institute
  
Funding Agency
  
Project Description
Pyrococcus furiosus DSM 3638 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX5558127  (Link to NCBI )
Experiment Title DNA-Seq of Pyrococcus furiosus DSM 3638
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name DSM3638-PacBio2
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5558125  (Link to NCBI )
Experiment Title DNA-Seq of Pyrococcus furiosus DSM 3638
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name DSM3638-PacBio1
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5558126  (Link to NCBI )
Experiment Title DNA-Seq of Pyrococcus furiosus DSM 3638
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name DSM3638-Illu
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
PROJECT COMPOSITION
Study Pyrococcus furiosus DSM 3638 isolate:VC1 Genome sequencing
Organism Pyrococcus furiosus DSM 3638
Analysis Projects Pyrococcus furiosus DSM 3638
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq; PacBio
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0000702
Organism Name
Pyrococcus furiosus DSM 3638  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
ARCHAEAL  
Phylogeny
EURYARCHAEOTA-THERMOCOCCI  
Genus
Pyrococcus  
Genus Synonyms
  
Species
Pyrococcus furiosus  
Subspecies
  
Species Synonyms
  
Strain
DSM 3638  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 3638  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.399  
Exemplar Name
Pyrococcus furiosus  
Taxon DOI
10.1601/tx.399  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 186497
NCBI Superkingdom
Archaea  
NCBI Kingdom
  
NCBI Phylum
Euryarchaeota  
NCBI Class
Thermococci  
NCBI Order
Thermococcales  
NCBI Family
Thermococcaceae  
NCBI Genus
Pyrococcus  
NCBI Species
Pyrococcus furiosus  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Hydrothermal vents  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 158448
Genbank 16S ID U20163
GENERAL PROPERTIES
Oxygen Requirement
Obligate anaerobe  
Cell Shape
Coccus-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Hyperthermophile  
Salinity
  
pH
5  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Marine
Sediment
Metabolisms Sulfur respiration
Phenotypes Radiation resistant
Energy Sources
  

 

 

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