PROJECT INFORMATION
GOLD Project ID
Gp0674415  
Project Name
Freshwater microbial communities from mesocosm pond in LEAP facility, McGill University’s Gault Nature Reserve QC, Canada - H1_09_20  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name LEAP 2016 Bacterioplankton metagenomic reads
NCBI BioProject Accession PRJNA767443
NCBI Locus Tag
  
NCBI BioSample Accession SAMN21905378
Source Sample ID
PI Unknown
Added By JGI automated process on 2022-09-21
Last Modified By
Project Comments
  
Project Status
incomplete  
Project Relevance Environmental
Sequencing Center University of Montreal (Canada)
Collaborating Institute
  
Funding Agency
  
Project Description
Freshwater microbial communities from mesocosm pond in LEAP facility, McGill University’s Gault Nature Reserve, pond H1 in day 35  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications mSystems: 7(2):e0148221 A Glyphosate-Based Herbicide Cross-Selects for Antibiotic Resistance Genes in Bacterioplankton Communities.
PubMed: 35266795 DOI: 10.1128/msystems.01482-21
SRA Experiment
 
SRA Experiment Id SRX12412333  (Link to NCBI )
Experiment Title LEAP 2016 Bacterioplankton metagenomic reads
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection RANDOM
Library Name pond H1 in day 35
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_4000
PROJECT COMPOSITION
Study Freshwater microbial communities from mesocosm ponds in LEAP facility, McGill University’s Gault Nature Reserve, QC, Canada
Biosample Freshwater microbial communities from mesocosm pond in LEAP facility, McGill University’s Gault Nature Reserve QC, Canada - H1_09_20
Analysis Projects
  
Number of Analysis Projects (AP) 0
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status In progress
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Freshwater microbial communities from mesocosm pond in LEAP facility, McGill University’s Gault Nature Reserve QC, Canada - H1_09_20
Other Names (alias, synonyms, short names)
  
Sample Description
Freshwater microbial communities from mesocosm pond in LEAP facility, McGill University’s Gault Nature Reserve, pond H1 in day 35  
SAMPLE TAXONOMY
NCBI Taxonomy ID 449393
GOLD CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Artificial ecosystem  
Ecosystem Type
Mesocosm  
Ecosystem Subtype
Lake water  
Specific Ecosystem
Sieved  

 

 

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