Studies
|
56,329 |
|
Biosamples
|
196,776 |
|
Sequencing Projects
|
525,145 |
|
Analysis Projects
|
385,404 |
| Organisms | 484,214 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0666653
|
|
Project Name
|
Thermorudis pharmacophila Wkt50.2
|
|
Other Names
|
|
|
Legacy GOLD ID
|
|
| NCBI BioProject Name |
|
|
NCBI BioProject Accession
|
|
|
NCBI Locus Tag
|
|
|
NCBI BioSample Accession
|
|
|
Source Sample ID
|
|
| PI | Matthew Stott |
| Added By | Matthew Stott on 2022-08-13 |
| Last Modified By | |
| Project Comments |
|
|
Project Status
|
Permanent Draft
|
|
Project Relevance
|
|
|
Sequencing Center
|
Harvard University
(USA)
|
|
Collaborating Institute
|
|
|
Funding Agency
|
|
|
Project Description
|
Characterisation of a thermophilic Chlorofelxi
|
| Is JGI Project |
No
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
JGI Data Utilization Status
|
|
|
JGI Award DOI
|
|
|
Genome Publications
|
|
|
Other Publications
|
|
|
Ignored Publications
|
|
|
Unassigned Publications
|
|
| SRA Experiment |
|
| PROJECT COMPOSITION | |
| Study |
Thermorudis pharmacophila Wkt50.2 |
| Organism |
Thermorudis pharmacophila Wkt50.2 |
| Analysis Projects |
Thermorudis pharmacophila Wkt50.2 |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 1: Standard Draft |
|
Finishing Goal
|
Level 1: Standard Draft |
|
Contamination Screening Input
|
Reads
|
|
DNA Amplification Method
|
PCR Based
|
|
Single Cell Lysis Protocol
|
NucleoSpin Tissue Kit (Macherey Nagel)
|
|
Single Cell Lysis Approach
|
Physical
|
|
Sequencing Comments
|
|
|
DNA Amplification Kit
|
|
|
Sequencing Technology
(MIGS-29)
|
Illumina MiSeq |
|
Library Method
(MIGS-28)
|
Nextera XT DNA Sample Preparation kit
|
|
Library Layout
|
Paired
|
|
Library Screening Method
|
Agilent 2100 Bioanalyzer (Agilent, CA USA)
|
|
Number Of Reads
|
1827718
|
|
Read Size
|
300 bp
|
|
Vector
|
|
| GC Percent |
60
|
| Chromosome Count |
1
|
| Plasmid Count |
0
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0615179 |
| Organism Name |
Thermorudis pharmacophila Wkt50.2
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
THERMOMICROBIOTA
|
| Genus |
Thermorudis
|
| Genus Synonyms |
|
| Species |
Thermorudis pharmacophila
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
Wkt50.2
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
|
| Type Strain |
Yes
|
| Exemplar DOI |
|
| Exemplar Name |
|
| Taxon DOI |
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
Yes
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
1167092 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Thermomicrobiota
|
| NCBI Class |
Thermomicrobia
|
| NCBI Order |
|
| NCBI Family |
|
| NCBI Genus |
Thermorudis
|
| NCBI Species |
Thermorudis pharmacophila
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Environmental
|
| Ecosystem Category |
Terrestrial
|
| Ecosystem Type |
Soil
|
| Ecosystem Subtype |
Geothermal field
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
HE794997 |
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
Aerobe
|
| Cell Shape |
Rod-shaped
|
| Motility |
Nonmotile
|
| Sporulation |
|
| Temperature Range |
Thermophile
|
| Salinity |
|
| pH |
6
|
| Cell Diameter |
0.9–1.1 um
|
| Cell Length |
2.1–2.8 um
|
| Color |
Pink
|
| Gram Staining |
Gram-
|
| Biotic Relationships |
|
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
Singles Pairs Chains |
| Diseases |
None |
| Known Habitats |
Geothermal soil |
| Metabolisms |
|
| Phenotypes |
|
| Energy Sources |
Heterotroph |
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