PROJECT INFORMATION | |
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GOLD Project ID
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Gp0665674
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Project Name
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Soil microbial communities from an agricultural field in Butler, South Dakota, USA - 97_877_SD_DR_0cm_c1_T1_18O_SIP_7
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Other Names
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Legacy GOLD ID
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NCBI BioProject Name |
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NCBI BioProject Accession
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NCBI Locus Tag
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NCBI BioSample Accession
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Source Sample ID
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PI | Erin Nuccio |
Added By | JGI automated process on 2022-07-29 |
Last Modified By | JGI automated process on 2023-01-21 |
Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Sequencing Center
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DOE Joint Genome Institute (JGI)
(USA)
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Collaborating Institute
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Funding Agency
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U.S. Department of Energy (DOE)
(USA)
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Project Description
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Soil microbial communities from an agricultural field in Butler, South Dakota, USA
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Is JGI Project |
Yes
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Project Information Visibility
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Public |
PROJECT TYPE | |
Specimen
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Biome |
Nucleic Acid
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DNA |
Sequencing Strategy
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Metagenome - SIP
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EXTERNAL PROJECT LINKS | |
JGI Data Utilization Status
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Restricted
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JGI Award DOI
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10.46936/10.25585/60001369 |
JGI Portal Download | Raw Sequence Data |
Genome Publications
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Other Publications
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Ignored Publications
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Unassigned Publications
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SRA Experiment |
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PROJECT COMPOSITION | |
Study |
Soil microbial communities from agricultural fields across the midwestern and eastern USA |
Biosample |
Soil microbial communities from an agricultural field in Butler, South Dakota, USA - 97_877_SD_DR_0cm_c1_T1_18O_SIP_7 |
Analysis Projects |
Soil microbial communities from an agricultural field in Butler, South Dakota, USA - 97_877_SD_DR_0cm_c1_T1_18O_SIP_7 |
SIP Projects | SIP Parent Gp0592557 → 19 SIP Fractions |
Number of Analysis Projects (AP) |
1 |
Number of Derived Analyis Projects (DAP) |
0
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SEQUENCING INFORMATION | |
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Sequencing Status
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Complete |
Sequencing Quality (MIGS-31) |
Level 1: Standard Draft |
Finishing Goal
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Level 1: Standard Draft |
Contamination Screening Input
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DNA Amplification Method
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Sorting Technology
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Illumina NovaSeq S4 |
Library Method
(MIGS-28)
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Illumina Nextera with Size Selection, Plates
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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GC Percent |
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Chromosome Count |
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Plasmid Count |
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SAMPLE NAME | |
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Sample Name |
Soil microbial communities from an agricultural field in Butler, South Dakota, USA - 97_877_SD_DR_0cm_c1_T1_18O_SIP_7 |
Other Names (alias, synonyms, short names) |
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Sample Description |
Soil microbial communities from an agricultural field in Butler, South Dakota, USA
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SAMPLE TAXONOMY | |
NCBI Taxonomy ID |
410658 |
GOLD CLASSIFICATION | |
Ecosystem |
Environmental
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Ecosystem Category |
Terrestrial
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Ecosystem Type |
Soil
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Ecosystem Subtype |
Agricultural land
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Specific Ecosystem |
Bulk soil
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