PROJECT INFORMATION
GOLD Project ID
Gp0665579  
Project Name
Soil microbial communities from an agricultural field in Butler, South Dakota, USA - 98_887_SD_DR_0cm_c2_T1_18O_SIP_20  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name
  
NCBI BioProject Accession
NCBI Locus Tag
  
NCBI BioSample Accession
Source Sample ID
PI Erin Nuccio
Added By JGI automated process on 2022-07-29
Last Modified By JGI automated process on 2022-09-02
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Soil microbial communities from an agricultural field in Butler, South Dakota, USA  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome - SIP  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
Restricted  
JGI Award DOI 10.46936/10.25585/60001369
JGI Portal Download Raw Sequence Data
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Soil microbial communities from agricultural fields across the midwestern and eastern USA
Biosample Soil microbial communities from an agricultural field in Butler, South Dakota, USA - 98_887_SD_DR_0cm_c2_T1_18O_SIP_20
Analysis Projects
  
SIP Projects SIP Parent Gp0592558 → 18 SIP Fractions
Number of Analysis Projects (AP) 0
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status In progress
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina NovaSeq S4
Library Method (MIGS-28)
Illumina Nextera with Size Selection, Plates  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Soil microbial communities from an agricultural field in Butler, South Dakota, USA - 98_887_SD_DR_0cm_c2_T1_18O_SIP_20
Other Names (alias, synonyms, short names)
  
Sample Description
Soil microbial communities from an agricultural field in Butler, South Dakota, USA  
SAMPLE TAXONOMY
NCBI Taxonomy ID 410658
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Agricultural land  
Specific Ecosystem
Bulk soil  

 

 

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