PROJECT INFORMATION
GOLD Project ID
Gp0662020  
Project Name
Nasopharynx viral communities from child with fever at St. Louis Children's Hospital, St. Louis, MO, USA - H_LA-638-9079  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name human metagenome, ViroCap testing
NCBI BioProject Accession PRJNA273884
NCBI Locus Tag
  
NCBI BioSample Accession SAMN03316979
Source Sample ID
PI Unknown
Added By JGI automated process on 2022-07-14
Last Modified By
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center McDonnell Genome Institute - Washington University School of Medicine (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Nasopharynx viral communities from child with fever at St. Louis Children's Hospital, St. Louis, MO, USA  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX861694  (Link to NCBI )
Experiment Title Whole metagenomic sequence of clinical isolate H_LA-638-9079
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection unspecified
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
PROJECT COMPOSITION
Study Nasopharynx and plasma viral communities from children with fever at St. Louis Children's Hospital, St. Louis, MO, USA
Biosample Nasopharynx viral communities from child with fever at St. Louis Children's Hospital, St. Louis, MO, USA - H_LA-638-9079
Analysis Projects Nasopharynx viral communities from child with fever at St. Louis Children's Hospital, St. Louis, MO, USA - H_LA-638-9079
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2000
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Nasopharynx viral communities from child with fever at St. Louis Children's Hospital, St. Louis, MO, USA - H_LA-638-9079
Other Names (alias, synonyms, short names)
  
Sample Description
Nasopharynx viral communities from child with fever at St. Louis Children's Hospital, St. Louis, MO, USA  
SAMPLE TAXONOMY
NCBI Taxonomy ID 646099
GOLD CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mammals: Human  
Ecosystem Type
Respiratory system  
Ecosystem Subtype
Pharynx/Throat  
Specific Ecosystem
Nasopharynx  

 

 

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