PROJECT INFORMATION
GOLD Project ID
Gp0657985  
Project Name
Listeria monocytogenes FSL J1-175  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Listeria monocytogenes FSL J1-175
NCBI BioProject Accession PRJNA664209
NCBI Locus Tag
IFI76  
NCBI BioSample Accession SAMN16231352
PI
Added By JGI automated process on 2022-06-29
Last Modified By JGI automated process on 2022-07-05
Project Comments
  
Project Status
Complete and Published  
Project Relevance
  
Sequencing Center University of Tennessee (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Listeria monocytogenes FSL J1-175 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX9174873  (Link to NCBI )
Experiment Title Illumina whole-genome sequencing of Listeria monocytogenes FSL J1-0175
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name FSL_J1-0175_Illumina
Library Layout PAIRED
Library Instrument NEXT_SEQ_550
 
SRA Experiment Id SRX9174877  (Link to NCBI )
Experiment Title Nanopore whole-genome sequencing of Listeria monocytogenes FSL J1-0175
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name FSL_J1-0175_Nanopore
Library Layout SINGLE
Library Instrument MIN_ION
PROJECT COMPOSITION
Study Listeria monocytogenes phage host strains genome sequencing and assembly
Organism Listeria monocytogenes FSL J1-175
Analysis Projects Listeria monocytogenes FSL J1-175
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina NextSeq 550, Oxford Nanopore
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0001567
Organism Name
Listeria monocytogenes FSL J1-175  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Listeria  
Genus Synonyms
  
Species
Listeria monocytogenes  
Subspecies
  
Species Synonyms
  
Strain
FSL J1-175  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 393118
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Bacilli  
NCBI Order
Bacillales  
NCBI Family
Listeriaceae  
NCBI Genus
Listeria  
NCBI Species
Listeria monocytogenes  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Chains
Diseases Listeriosis
Food poisoning
Known Habitats Intestinal tract
Aquatic
Soil
Host
Food
Fresh water
Metabolisms
  
Phenotypes Pathogen
Energy Sources Chemoorganotroph

 

 

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