PROJECT INFORMATION
GOLD Project ID
Gp0657884  
Project Name
Psychrobacter arcticus 273-4  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Psychrobacter growth screen and comparative genomics
NCBI BioProject Accession PRJEB40380
NCBI Locus Tag
JMV65  
NCBI BioSample Accession SAMEA7339713
Source Sample ID
PI Unknown
Added By JGI automated process on 2022-06-29
Last Modified By
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center Max Planck Institute for Developmental Biology
Collaborating Institute
  
Funding Agency
  
Project Description
Psychrobacter arcticus 273-4 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id ERX4572942  (Link to NCBI )
Experiment Title Illumina MiSeq paired end sequencing
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name unspecified
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
 
SRA Experiment Id ERX4572938  (Link to NCBI )
Experiment Title Illumina HiSeq 3000 paired end sequencing
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name unspecified
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_3000
 
SRA Experiment Id ERX4572937  (Link to NCBI )
Experiment Title Illumina HiSeq 3000 paired end sequencing
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name unspecified
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_3000
 
SRA Experiment Id ERX4572939  (Link to NCBI )
Experiment Title Illumina HiSeq 3000 paired end sequencing
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name unspecified
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_3000
 
SRA Experiment Id ERX4572941  (Link to NCBI )
Experiment Title Illumina MiSeq paired end sequencing
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name unspecified
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
 
SRA Experiment Id ERX4572940  (Link to NCBI )
Experiment Title Illumina MiSeq paired end sequencing
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name unspecified
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
PROJECT COMPOSITION
Study Psychrophilic species of the genus Psychrobacter are likely descendants of pathobionts
Organism Psychrobacter arcticus 273-4
Analysis Projects Psychrobacter arcticus 273-4
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0000467
Organism Name
Psychrobacter arcticus 273-4  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Psychrobacter  
Genus Synonyms
  
Species
Psychrobacter arcticus  
Subspecies
  
Species Synonyms
  
Strain
273-4  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 17307  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.10107  
Exemplar Name
Psychrobacter arcticus  
Taxon DOI
10.1601/tx.10107  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 259536
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Moraxellales  
NCBI Family
Moraxellaceae  
NCBI Genus
Psychrobacter  
NCBI Species
Psychrobacter arcticus  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Permafrost  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 690310
Genbank 16S ID AY444822
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
  
Temperature Range
Psychrophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Pairs
Diseases None
Known Habitats Soil
Fish
Fresh water
Metabolisms
  
Phenotypes Radiation resistant
Energy Sources Heterotroph

 

 

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