PROJECT INFORMATION
GOLD Project ID
Gp0653830  
Project Name
Lelliottia nimipressuralis CCUG 25894  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Lelliottia nimipressuralis CCUG 25894
NCBI BioProject Accession PRJNA305687
NCBI Locus Tag
ETG88  
NCBI BioSample Accession SAMN10768966
Source Sample ID
PI Unknown
Added By JGI automated process on 2022-06-29
Last Modified By
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Model Organism
Sequencing Center University of Gothenburg - CCUG
Collaborating Institute
  
Funding Agency
  
Project Description
Lelliottia nimipressuralis CCUG 25894 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications International journal of systematic and evolutionary microbiology: 70(8):4544-4554 sp. nov., isolated from raw meat.
PubMed: 32618559 DOI: 10.1099/ijsem.0.004311
Frontiers in microbiology: Isolated From a Wound Infection, Carries a Novel Quinolone Resistance Gene Variant.
PubMed: 31781055 DOI: 10.3389/fmicb.2019.02511
Show more publications...

International journal of systematic and evolutionary microbiology: 69(3):783-790 Corynebacterium alimapuense sp. nov., an obligate marine actinomycete isolated from sediment of Valparaíso bay, Chile.
PubMed: 30688628 DOI: 10.1099/ijsem.0.003237
Genome announcements: Genome Sequences of Two Naphthalene-Degrading Strains of , Isolated from Polluted Marine Sediment and from an Oil Refinery Site.
PubMed: 28385841 DOI: e00116-17
SRA Experiment
 
SRA Experiment Id SRX5381954  (Link to NCBI )
Experiment Title Whole-genome sequencing of Lelliottia nimipressuralis CCUG 25894T
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM PCR
Library Name UVUP2
Library Layout SINGLE
Library Instrument ION_TORRENT_PGM
 
SRA Experiment Id SRX5381955  (Link to NCBI )
Experiment Title Whole-genome sequencing of Lelliottia nimipressuralis CCUG 25894T
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM PCR
Library Name YTSU5
Library Layout SINGLE
Library Instrument ION_TORRENT_PGM
PROJECT COMPOSITION
Study Whole genome sequencing of Pseudomonas species from the Culture Collection University of Gothenburg (CCUG)
Organism Lelliottia nimipressuralis CCUG 25894
Analysis Projects Lelliottia nimipressuralis CCUG 25894
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Ion Torrent PGM
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0636216
Organism Name
Lelliottia nimipressuralis CCUG 25894  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Lelliottia  
Genus Synonyms
  
Species
Lelliottia nimipressuralis  
Subspecies
  
Species Synonyms
  
Strain
CCUG 25894  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
CCUG 25894  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 69220
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Enterobacterales  
NCBI Family
Enterobacteriaceae  
NCBI Genus
Lelliottia  
NCBI Species
Lelliottia nimipressuralis  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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