PROJECT INFORMATION
GOLD Project ID
Gp0646013  
Project Name
Candida glabrata ATCC 2001  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name
  
NCBI BioProject Accession PRJNA596126
NCBI Locus Tag
GVI51  
NCBI BioSample Accession SAMN13613350
PI
Added By JGI automated process on 2022-05-09
Last Modified By JGI automated process on 2022-05-16
Project Comments
  
Project Status
Complete and Published  
Project Relevance Medical
Sequencing Center Johns Hopkins School of Medicine
Collaborating Institute
  
Funding Agency
  
Project Description
Candida glabrata ATCC 2001 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications Molecular microbiology 113(6):1209-1224 De novo genome assembly of Candida glabrata reveals cell wall protein complement and structure of dispersed tandem repeat arrays.

SRA Experiment
 
SRA Experiment Id SRX7393580  (Link to NCBI )
Experiment Title Pacbio of [Candida] glabrata ATCC2001(CBS138):Pacbio sequencing of Candida grabrata
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name m140326_073259_42159
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
PROJECT COMPOSITION
Study Fusarium sarcochroum NRRL 20472 genome sequencing
Organism Candida glabrata ATCC 2001
Analysis Projects Candida glabrata ATCC 2001
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) PacBio RS II
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0632177
Organism Name
Candida glabrata ATCC 2001  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
FUNGI-ASCOMYCOTA  
Genus
Nakaseomyces  
Genus Synonyms
  
Species
Candida glabrata  
Subspecies
  
Species Synonyms
  
Strain
ATCC 2001  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
ATCC 2001  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 5478
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Fungi  
NCBI Phylum
Ascomycota  
NCBI Class
Saccharomycetes  
NCBI Order
Saccharomycetales  
NCBI Family
Saccharomycetaceae  
NCBI Genus
Nakaseomyces  
NCBI Species
[Candida] glabrata  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mammals: Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Large intestine  
Specific Ecosystem
Fecal  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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