PROJECT INFORMATION
GOLD Project ID
Gp0645781  
Project Name
Pyrenophora tritici-repentis 134  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Pyrenophora tritici-repentis Genome sequencing
NCBI BioProject Accession PRJNA315205
NCBI Locus Tag
A1F94  
NCBI BioSample Accession SAMN04550938
PI
Added By JGI automated process on 2022-05-09
Last Modified By JGI automated process on 2022-05-16
Project Comments
  
Project Status
Complete and Published  
Project Relevance Agricultural
Sequencing Center Curtin University
Collaborating Institute
  
Funding Agency
  
Project Description
Pyrenophora tritici-repentis 134 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications BMC genomics 19(1):279 Comparative genomics of the wheat fungal pathogen Pyrenophora tritici-repentis reveals chromosomal variations and genome plasticity.

SRA Experiment
  
PROJECT COMPOSITION
Study Pyrenophora tritici-repentis Genome sequencing
Organism Pyrenophora tritici-repentis 134
Analysis Projects Pyrenophora tritici-repentis 134
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Oxford Nanopore MinION
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0631961
Organism Name
Pyrenophora tritici-repentis 134  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
FUNGI-ASCOMYCOTA  
Genus
Pyrenophora  
Genus Synonyms
  
Species
Pyrenophora tritici-repentis  
Subspecies
  
Species Synonyms
  
Strain
134  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 45151
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Fungi  
NCBI Phylum
Ascomycota  
NCBI Class
Dothideomycetes  
NCBI Order
Pleosporales  
NCBI Family
Pleosporaceae  
NCBI Genus
Pyrenophora  
NCBI Species
Pyrenophora tritici-repentis  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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