Studies
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56,329 |
|
Biosamples
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196,776 |
|
Sequencing Projects
|
525,145 |
|
Analysis Projects
|
385,404 |
| Organisms | 484,214 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0644096
|
|
Project Name
|
Andropogon gerardi Kellogg1272 Transcriptome - young_leaf_1
|
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Other Names
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Legacy GOLD ID
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| NCBI BioProject Name |
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NCBI BioProject Accession
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NCBI Locus Tag
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NCBI BioSample Accession
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Source Sample ID
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|
| PI | Elizabeth Kellogg |
| Added By | JGI automated process on 2022-05-06 |
| Last Modified By | JGI automated process on 2022-12-23 |
| Project Comments |
|
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Project Status
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incomplete
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Project Relevance
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Sequencing Center
|
DOE Joint Genome Institute (JGI)
(USA)
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Collaborating Institute
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Funding Agency
|
U.S. Department of Energy (DOE)
(USA)
|
|
Project Description
|
Andropogon gerardi Kellogg1272 Transcriptome; sample from Young_Leaf
|
| Is JGI Project |
Yes
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
RNA |
|
Sequencing Strategy
|
Transcriptome
|
| EXTERNAL PROJECT LINKS | |
|
JGI Data Utilization Status
|
Restricted
|
|
JGI Award DOI
|
10.46936/10.25585/60001091 |
| JGI Portal Download | Raw Sequence Data |
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Genome Publications
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Other Publications
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Ignored Publications
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Unassigned Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |
| Study |
Pan-genomics of big bluestem, a broadly adapted dominant grass |
| Organism |
Andropogon gerardi Kellogg1272 |
| Analysis Projects |
|
| Number of Analysis Projects (AP) |
0 |
| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
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Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
|
|
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Sequencing Technology
(MIGS-29)
|
PacBio Sequel IIe Illumina HiSeq X Ten |
|
Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0509772 |
| Organism Name |
Andropogon gerardi Kellogg1272
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
EUKARYAL
|
| Phylogeny |
PLANTS-STREPTOPHYTA
|
| Genus |
Andropogon
|
| Genus Synonyms |
|
| Species |
Andropogon gerardi
|
| Subspecies |
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| Species Synonyms |
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| Strain |
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| Strain Synonyms |
|
| Serovar/Cultivar |
Kellogg1272
|
| Culture Collection ID |
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| Type Strain |
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| Exemplar DOI |
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| Exemplar Name |
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| Taxon DOI |
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| Biosafety Level |
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| Organism Comments |
|
| Cultured |
Yes
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| Culture Type |
Isolate
|
| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
|
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ORGANISM TAXONOMY
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|
| NCBI Taxonomy ID |
79824 |
| NCBI Superkingdom |
Eukaryota
|
| NCBI Kingdom |
Viridiplantae
|
| NCBI Phylum |
Streptophyta
|
| NCBI Class |
Magnoliopsida
|
| NCBI Order |
Poales
|
| NCBI Family |
Poaceae
|
| NCBI Genus |
Andropogon
|
| NCBI Species |
Andropogon gerardi
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Environmental
|
| Ecosystem Category |
Terrestrial
|
| Ecosystem Type |
Unclassified
|
| Ecosystem Subtype |
Unclassified
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
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| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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| EXPERIMENT | |
|---|---|
| Experimental Conditions |
|
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