PROJECT INFORMATION | |||||||||||||||||||
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GOLD Project ID
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Gp0643258
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Project Name
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Metatranscriptome of rhizosphere microbial communities from fir plant in Hohenlockstedt, Germany - R-2T
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Other Names
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Legacy GOLD ID
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NCBI BioProject Name | Microbial communities in Abies nordmanniana | ||||||||||||||||||
NCBI BioProject Accession
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PRJNA515250 |
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NCBI Locus Tag
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NCBI BioSample Accession
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SAMN10747878 |
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Source Sample ID
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PI | Unknown | ||||||||||||||||||
Added By | JGI automated process on 2022-05-02 | ||||||||||||||||||
Last Modified By | Supratim Mukherjee on 2022-05-18 | ||||||||||||||||||
Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Environmental |
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Sequencing Center
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University of Copenhagen
(Denmark)
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Collaborating Institute
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Funding Agency
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Project Description
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Metatranscriptome of rhizosphere microbial communities from fir plant in Hohenlockstedt, Germany
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Is JGI Project |
No
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Project Information Visibility
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Public | ||||||||||||||||||
PROJECT TYPE | |||||||||||||||||||
Specimen
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Biome |
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Nucleic Acid
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RNA |
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Sequencing Strategy
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Metatranscriptome
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EXTERNAL PROJECT LINKS | |||||||||||||||||||
JGI Data Utilization Status
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JGI Award DOI
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Genome Publications
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Other Publications
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Ignored Publications
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Unassigned Publications
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SRA Experiment |
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PROJECT COMPOSITION | |||||||||||||||||||
Study |
Soil microbial communities from Hohenlockstedt, Germany |
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Biosample |
Metatranscriptome of rhizosphere microbial communities from fir plant in Hohenlockstedt, Germany - R-2T |
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Analysis Projects |
Metatranscriptome of rhizosphere microbial communities from fir plant in Hohenlockstedt, Germany - R-2T |
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Number of Analysis Projects (AP) |
1 |
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Number of Derived Analyis Projects (DAP) |
0
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SEQUENCING INFORMATION | |
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Sequencing Status
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Complete |
Sequencing Quality (MIGS-31) |
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Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Illumina MiSeq |
Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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GC Percent |
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Chromosome Count |
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Plasmid Count |
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SAMPLE NAME | |
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Sample Name |
Metatranscriptome of rhizosphere microbial communities from fir plant in Hohenlockstedt, Germany - R-2T |
Other Names (alias, synonyms, short names) |
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Sample Description |
Metatranscriptome of rhizosphere microbial communities from fir plant in Hohenlockstedt, Germany
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SAMPLE TAXONOMY | |
NCBI Taxonomy ID |
939928 |
GOLD CLASSIFICATION | |
Ecosystem |
Host-associated
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Ecosystem Category |
Plants
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Ecosystem Type |
Roots
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Ecosystem Subtype |
Rhizosphere
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Specific Ecosystem |
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EXPERIMENT | |
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Experimental Conditions |
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