PROJECT INFORMATION
GOLD Project ID
Gp0643196  
Project Name
Metatranscriptome of peat soil microbial communities from Ny-Alesund, Svalbard - exclosed_rep1  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name peat soil metagenome
NCBI BioProject Accession PRJNA170725
NCBI Locus Tag
  
NCBI BioSample Accession SAMN17679116
PI
Added By JGI automated process on 2022-05-02
Last Modified By Supratim Mukherjee on 2022-05-18
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Environmental
Sequencing Center University of Tromso
Collaborating Institute
  
Funding Agency
  
Project Description
Metatranscriptome of peat soil microbial communities from Ny-Alesund, Svalbard  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid RNA
Sequencing Strategy
Metatranscriptome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX10007824  (Link to NCBI )
Experiment Title Peat soil metatranscriptome of grazing exclosed sites
Exp Library Strategy OTHER
Library Source METATRANSCRIPTOMIC
Library Selection RANDOM
Library Name ex1_RNA
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_4000
PROJECT COMPOSITION
Study Metatranscriptome of arctic peat soil microbial communities from Svalbard, Norway
Biosample Peat soil microbial communities from Ny-Alesund, Svalbard - exclosed_rep1
Analysis Projects Metatranscriptome of peat soil microbial communities from Ny-Alesund, Svalbard - exclosed_rep1
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 4000
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Peat soil microbial communities from Ny-Alesund, Svalbard - exclosed_rep1
Other Names (alias, synonyms, short names)
  
Sample Description
Peat soil microbial communities from Ny-Alesund, Svalbard  
SAMPLE TAXONOMY
NCBI Taxonomy ID 410658
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Peat  
Specific Ecosystem
  

 

 

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