PROJECT INFORMATION
GOLD Project ID
Gp0643180  
Project Name
Rhizosphere soil microbial communities from Browntop plant in pasture in Turakina, New Zealand - NZFACE.R5.Browntop  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name New Zealand Free Air Carbon dioxide Enrichment soil samples
NCBI BioProject Accession PRJEB15435
NCBI Locus Tag
  
NCBI BioSample Accession SAMEA4443726
PI
Added By JGI automated process on 2022-05-02
Last Modified By Supratim Mukherjee on 2022-05-18
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center University of California, San Diego (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Rhizosphere soil microbial communities from Browntop plant in pasture in Turakina, New Zealand; Ambient atmospheric CO2; No warming  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id ERX1708479  (Link to NCBI )
Experiment Title Illumina HiSeq 2000 sequencing; qiita_ptid_75:659.NZFACE.R5.Browntop
Exp Library Strategy OTHER
Library Source METAGENOMIC
Library Selection PCR
Library Name 659.NZFACE.R5.Browntop
Library Layout SINGLE
Library Instrument ILLUMINA_HI_SEQ_2000
PROJECT COMPOSITION
Study Soil microbial communities from pasture in Turakina, New Zealand
Biosample Rhizosphere soil microbial communities from Browntop plant in pasture in Turakina, New Zealand - NZFACE.R5.Browntop
Analysis Projects Rhizosphere soil microbial communities from Browntop plant in pasture in Turakina, New Zealand - NZFACE.R5.Browntop
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2000
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Rhizosphere soil microbial communities from Browntop plant in pasture in Turakina, New Zealand - NZFACE.R5.Browntop
Other Names (alias, synonyms, short names)
  
Sample Description
Rhizosphere soil microbial communities from Browntop plant in pasture in Turakina, New Zealand; Ambient atmospheric CO2; No warming  
SAMPLE TAXONOMY
NCBI Taxonomy ID 939928
GOLD CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Roots  
Ecosystem Subtype
Rhizosphere  
Specific Ecosystem
  

 

 

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