PROJECT INFORMATION
GOLD Project ID
Gp0642419  
Project Name
Komodo Dragon cage microbial communities from Denver, CO, USA - DZF.6272012.shipping.crate  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name The oral and skin microbiomes of captive Komodo Dragons are significantly shared with their habitat.
NCBI BioProject Accession PRJEB14602
NCBI Locus Tag
  
NCBI BioSample Accession SAMEA4051434
PI
Added By JGI automated process on 2022-05-02
Last Modified By
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center University of California, San Diego (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Komodo Dragon cage microbial communities from Denver, CO, USA  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id ERX1545489  (Link to NCBI )
Experiment Title Illumina HiSeq 2000 sequencing; qiita_ptid_59:1747.DZF.6272012.shipping.crate
Exp Library Strategy OTHER
Library Source METAGENOMIC
Library Selection PCR
Library Name 1747.DZF.6272012.shipping.crate
Library Layout SINGLE
Library Instrument ILLUMINA_HI_SEQ_2000
PROJECT COMPOSITION
Study Captive reptiles associated microbial communities from various locations in USA
Biosample Komodo Dragon cage microbial communities from Denver, CO, USA - DZF.6272012.shipping.crate
Analysis Projects
  
Number of Analysis Projects (AP) 0
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status In progress
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Komodo Dragon cage microbial communities from Denver, CO, USA - DZF.6272012.shipping.crate
Other Names (alias, synonyms, short names)
  
Sample Description
Komodo Dragon cage microbial communities from Denver, CO, USA  
SAMPLE TAXONOMY
NCBI Taxonomy ID 1256227
GOLD CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Built environment  
Ecosystem Type
Animal cage  
Ecosystem Subtype
Reptile cage  
Specific Ecosystem
  

 

 

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