PROJECT INFORMATION
GOLD Project ID
Gp0622633  
Project Name
Sphaerochaeta associata VKM B-2742  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Sphaerochaeta associata VKM B-2742 Genome sequencing
NCBI BioProject Accession PRJNA822125
NCBI Locus Tag
  
NCBI BioSample Accession SAMN27176868
PI Oleg V Vasilenko
Added By Supratim Mukherjee on 2022-04-19
Last Modified By Supratim Mukherjee on 2022-04-19
Project Comments
  
Project Status
Complete and Published  
Project Relevance
  
Sequencing Center Russian Academy of Sciences (Russia)
Collaborating Institute
  
Funding Agency
  
Project Description
Sphaerochaeta associata VKM B-2742 Genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Sphaerochaeta associata VKM B-2742 - Russian Academy of Sciences
Organism Sphaerochaeta associata VKM B-2742
Analysis Projects Sphaerochaeta associata VKM B-2742
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Oxford Nanopore MinION
Illumina HiSeq
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0609581
Organism Name
Sphaerochaeta associata VKM B-2742  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
SPIROCHAETES  
Genus
Sphaerochaeta  
Genus Synonyms
  
Species
Sphaerochaeta associata  
Subspecies
  
Species Synonyms
  
Strain
VKM B-2742  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
VKM B-2742  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1129264
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Spirochaetes  
NCBI Class
Spirochaetia  
NCBI Order
Spirochaetales  
NCBI Family
Sphaerochaetaceae  
NCBI Genus
Sphaerochaeta  
NCBI Species
Sphaerochaeta associata  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Microbial  
Ecosystem Type
Bacteria  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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