Studies
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56,334 |
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Biosamples
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196,988 |
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Sequencing Projects
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525,360 |
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Analysis Projects
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384,991 |
| Organisms | 484,221 |
| PROJECT INFORMATION | |||||||||||||||||||
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GOLD Project ID
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Gp0618293
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Project Name
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Dehalococcoides mccartyi CWV2
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Other Names
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Legacy GOLD ID
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| NCBI BioProject Name | Dehalococcoides mccartyi strain:CWV2 Genome sequencing and assembly | ||||||||||||||||||
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NCBI BioProject Accession
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PRJNA748734 |
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NCBI Locus Tag
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CWV2
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NCBI BioSample Accession
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SAMN20665584 |
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Source Sample ID
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| PI | Che-Wei Lu | ||||||||||||||||||
| Added By | Che-Wei Lu on 2022-03-28 | ||||||||||||||||||
| Last Modified By | JGI automated process on 2022-03-30 | ||||||||||||||||||
| Project Comments |
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Project Status
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Complete and Published
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Project Relevance
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Sequencing Center
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National Central University
(Taiwan)
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Collaborating Institute
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Funding Agency
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Project Description
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Strain CWV2 grows at a stronger dechlorination rate than other chloroethene respiring Dehalococcoides strains. This study aims to elucidate the genome and identify the unique reductive dehalogenase genes of strain CWV2 during trichloroethene to ethene respiration.
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| Is JGI Project |
No
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Project Information Visibility
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Public | ||||||||||||||||||
| PROJECT TYPE | |||||||||||||||||||
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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JGI Data Utilization Status
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JGI Award DOI
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Genome Publications
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Other Publications
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Unassigned Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |||||||||||||||||||
| Study |
Dehalococcoides mccartyi CWV2 |
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| Organism |
Dehalococcoides mccartyi CWV2 |
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| Analysis Projects |
Dehalococcoides mccartyi CWV2 |
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| Number of Analysis Projects (AP) |
1 |
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| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
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Sequencing Status
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Complete |
| Sequencing Quality (MIGS-31) |
Level 6: Finished |
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Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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PCR Based
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Oxford Nanopore |
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Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
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| GOLD Organism ID |
Go0599007 |
| Organism Name |
Dehalococcoides mccartyi CWV2
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| Other names (alias, synonyms, short names, common names) |
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| Organism Domain |
BACTERIAL
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| Phylogeny |
CHLOROFLEXOTA
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| Genus |
Dehalococcoides
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| Genus Synonyms |
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| Species |
Dehalococcoides mccartyi
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| Subspecies |
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| Species Synonyms |
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| Strain |
CWV2
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| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
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| Type Strain |
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| Exemplar DOI |
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| Exemplar Name |
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| Taxon DOI |
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| Biosafety Level |
1
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| Organism Comments |
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| Cultured |
Yes
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| Culture Type |
Isolate
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| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
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| NCBI Taxonomy ID |
61435 |
| NCBI Superkingdom |
Bacteria
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| NCBI Kingdom |
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| NCBI Phylum |
Chloroflexota
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| NCBI Class |
Dehalococcoidia
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| NCBI Order |
Dehalococcoidales
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| NCBI Family |
Dehalococcoidaceae
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| NCBI Genus |
Dehalococcoides
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| NCBI Species |
Dehalococcoides mccartyi
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| ISOLATION CLASSIFICATION | |
| Ecosystem |
Environmental
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| Ecosystem Category |
Aquatic
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| Ecosystem Type |
Deep subsurface
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| Ecosystem Subtype |
Groundwater
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| Specific Ecosystem |
Unclassified
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
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| Oxygen Requirement |
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| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
Mesophile
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| Salinity |
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| pH |
7
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
Singles |
| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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