PROJECT INFORMATION
GOLD Project ID
Gp0616744  
Project Name
Plasmodium vivax PvW1  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Controlled_human_malaria_infection_with_PvW1___a_new_clone_of_Plasmodium_vivax_with_high_quality_genome_assembly
NCBI BioProject Accession PRJEB45464
NCBI Locus Tag
  
NCBI BioSample Accession SAMEA6147788
PI Unknown
Added By JGI automated process on 2022-03-02
Last Modified By JGI automated process on 2022-03-03
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center Wellcome Trust Sanger Institute (United Kingdom)
Collaborating Institute
  
Funding Agency
  
Project Description
Plasmodium vivax PvW1 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id ERX5516566  (Link to NCBI )
Experiment Title Sequel sequencing
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name DN599117N-A1
Library Layout SINGLE
Library Instrument SEQUEL
 
SRA Experiment Id ERX5516565  (Link to NCBI )
Experiment Title Sequel sequencing
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name DN599117N-A1
Library Layout SINGLE
Library Instrument SEQUEL
 
SRA Experiment Id ERX5549454  (Link to NCBI )
Experiment Title Sequel sequencing
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name 28182841
Library Layout SINGLE
Library Instrument SEQUEL
 
SRA Experiment Id ERX5549453  (Link to NCBI )
Experiment Title Sequel sequencing
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name 28182841
Library Layout SINGLE
Library Instrument SEQUEL
PROJECT COMPOSITION
Study Plasmodium vivax PvW1 genome
Organism Plasmodium vivax PvW1
Analysis Projects Plasmodium vivax PvW1
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Draft
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0598315
Organism Name
Plasmodium vivax PvW1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
PROTISTS-APICOMPLEXA  
Genus
Plasmodium  
Genus Synonyms
  
Species
Plasmodium vivax  
Subspecies
  
Species Synonyms
  
Strain
PvW1  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 5855
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
  
NCBI Phylum
Apicomplexa  
NCBI Class
Aconoidasida  
NCBI Order
Haemosporida  
NCBI Family
Plasmodiidae  
NCBI Genus
Plasmodium  
NCBI Species
Plasmodium vivax  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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