PROJECT INFORMATION
GOLD Project ID
Gp0612548  
Project Name
Human nasopharyngeal microbial communities from Livermore, California, USA - COVID-LLNL055  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Human nasopharyngeal microbial communities from Livermore, California, USA - COVID-LLNL055
NCBI BioProject Accession PRJNA800889
NCBI Locus Tag
  
NCBI BioSample Accession SAMN25290520
Source Sample ID
PI Nigel Mouncey
Added By JGI automated process on 2022-01-24
Last Modified By JGI automated process on 2022-09-02
Project Comments
  
Project Status
targeted  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Amplicon sequencing of human nasopharyngeal microbial communities from Livermore, California, USA; sample collected from nasopharyngeal (NP) swab  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Targeted Gene Survey  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
Unrestricted  
JGI Award DOI 10.46936/10.25585/60000990
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Human nasal/oral microbial communities from Livermore, California, USA
Biosample Human nasopharyngeal microbial communities from Livermore, California, USA - COVID-LLNL055
Analysis Projects
  
Number of Analysis Projects (AP) 0
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina NovaSeq S4
Library Method (MIGS-28)
Production RnD, Plates  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Human nasopharyngeal microbial communities from Livermore, California, USA - COVID-LLNL055
Other Names (alias, synonyms, short names)
  
Sample Description
Human nasopharyngeal microbial communities from Livermore, California, USA; sample collected from nasopharyngeal (NP) swab  
SAMPLE TAXONOMY
NCBI Taxonomy ID 1131769
GOLD CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mammals: Human  
Ecosystem Type
Respiratory system  
Ecosystem Subtype
Pharynx/Throat  
Specific Ecosystem
Nasopharynx  

 

 

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