PROJECT INFORMATION | |
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GOLD Project ID
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Gp0612548
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Project Name
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Human nasopharyngeal microbial communities from Livermore, California, USA - COVID-LLNL055
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Other Names
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Legacy GOLD ID
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NCBI BioProject Name | Human nasopharyngeal microbial communities from Livermore, California, USA - COVID-LLNL055 |
NCBI BioProject Accession
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PRJNA800889 |
NCBI Locus Tag
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NCBI BioSample Accession
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SAMN25290520 |
Source Sample ID
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PI | Nigel Mouncey |
Added By | JGI automated process on 2022-01-24 |
Last Modified By | JGI automated process on 2022-09-02 |
Project Comments |
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Project Status
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targeted
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Project Relevance
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Sequencing Center
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DOE Joint Genome Institute (JGI)
(USA)
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Collaborating Institute
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Funding Agency
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U.S. Department of Energy (DOE)
(USA)
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Project Description
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Amplicon sequencing of human nasopharyngeal microbial communities from Livermore, California, USA; sample collected from nasopharyngeal (NP) swab
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Is JGI Project |
Yes
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Project Information Visibility
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Public |
PROJECT TYPE | |
Specimen
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Biome |
Nucleic Acid
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DNA |
Sequencing Strategy
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Targeted Gene Survey
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EXTERNAL PROJECT LINKS | |
JGI Data Utilization Status
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Unrestricted
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JGI Award DOI
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10.46936/10.25585/60000990 |
Genome Publications
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Other Publications
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Ignored Publications
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Unassigned Publications
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SRA Experiment |
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PROJECT COMPOSITION | |
Study |
Human nasal/oral microbial communities from Livermore, California, USA |
Biosample |
Human nasopharyngeal microbial communities from Livermore, California, USA - COVID-LLNL055 |
Analysis Projects |
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Number of Analysis Projects (AP) |
0 |
Number of Derived Analyis Projects (DAP) |
0
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SEQUENCING INFORMATION | |
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Sequencing Status
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Complete |
Sequencing Quality (MIGS-31) |
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Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Illumina NovaSeq S4 |
Library Method
(MIGS-28)
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Production RnD, Plates
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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GC Percent |
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Chromosome Count |
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Plasmid Count |
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SAMPLE NAME | |
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Sample Name |
Human nasopharyngeal microbial communities from Livermore, California, USA - COVID-LLNL055 |
Other Names (alias, synonyms, short names) |
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Sample Description |
Human nasopharyngeal microbial communities from Livermore, California, USA; sample collected from nasopharyngeal (NP) swab
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SAMPLE TAXONOMY | |
NCBI Taxonomy ID |
1131769 |
GOLD CLASSIFICATION | |
Ecosystem |
Host-associated
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Ecosystem Category |
Mammals: Human
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Ecosystem Type |
Respiratory system
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Ecosystem Subtype |
Pharynx/Throat
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Specific Ecosystem |
Nasopharynx
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