PROJECT INFORMATION
GOLD Project ID
Gp0610316  
Project Name
Rhizobium pusense 17-1009  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Agrobacterium
NCBI BioProject Accession PRJNA607555
NCBI Locus Tag
G6M80  
NCBI BioSample Accession SAMN14165621
PI
Added By JGI automated process on 2021-12-23
Last Modified By
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Agricultural
Sequencing Center Oregon State University (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Genome sequencing as part of a study on Ti plasmid evolution and epidemiology  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications "Science (New York, N.Y.)" Unexpected conservation and global transmission of agrobacterial virulence plasmids.

SRA Experiment
  
PROJECT COMPOSITION
Study Agrobacterium tumefaciens and Agrobacterium rhizogenes strains sequenced as part of a study on Ti plasmid evolution and epidemiology
Organism Rhizobium pusense 17-1009
Analysis Projects Rhizobium pusense 17-1009
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0596363
Organism Name
Rhizobium pusense 17-1009  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Rhizobium  
Genus Synonyms
  
Species
Rhizobium pusense  
Subspecies
  
Species Synonyms
  
Strain
17-1009  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 648995
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Hyphomicrobiales  
NCBI Family
Rhizobiaceae  
NCBI Genus
Rhizobium  
NCBI Species
Rhizobium pusense  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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