Studies
|
56,036 |
|
Biosamples
|
191,586 |
|
Sequencing Projects
|
515,941 |
|
Analysis Projects
|
381,622 |
| Organisms | 480,438 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0609846
|
|
Project Name
|
Planctomycetota bacterium AG-464-F06
|
|
Other Names
|
|
|
Legacy GOLD ID
|
|
| NCBI BioProject Name | GORG-tropics |
|
NCBI BioProject Accession
|
PRJEB33281 |
|
NCBI Locus Tag
|
GOL84
|
|
NCBI BioSample Accession
|
SAMEA6079165 |
|
Source Sample ID
|
|
| PI | Unknown |
| Added By | JGI automated process on 2021-12-23 |
| Last Modified By | Supratim Mukherjee on 2022-11-08 |
| Project Comments |
|
|
Project Status
|
Permanent Draft
|
|
Project Relevance
|
|
|
Sequencing Center
|
Woods Hole Oceanographic Institution
|
|
Collaborating Institute
|
|
|
Funding Agency
|
|
|
Project Description
|
Planctomycetota bacterium AG-464-F06 genome sequencing
|
| Is JGI Project |
No
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
JGI Data Utilization Status
|
|
|
JGI Award DOI
|
|
|
Genome Publications
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|
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Other Publications
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|
Ignored Publications
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Unassigned Publications
|
Cell: 179(7):1623-1635.e11 Charting the Complexity of the Marine Microbiome through Single-Cell Genomics. PubMed: 31835036 DOI: 10.1016/j.cell.2019.11.017 |
| SRA Experiment |
|
| PROJECT COMPOSITION | |
| Study |
Charting the complexity of the marine microbiome through single cell genomics |
| Organism |
Planctomycetota bacterium AG-464-F06 |
| Analysis Projects |
Planctomycetes bacterium AG-464-F06 |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
|
|
Finishing Goal
|
|
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Contamination Screening Input
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DNA Amplification Method
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|
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Sorting Technology
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|
|
Single Cell Lysis Protocol
|
|
|
Single Cell Lysis Approach
|
|
|
Sequencing Comments
|
|
|
DNA Amplification Kit
|
|
|
Sequencing Technology
(MIGS-29)
|
|
|
Library Method
(MIGS-28)
|
|
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0595901 |
| Organism Name |
Planctomycetota bacterium AG-464-F06
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
PLANCTOMYCETES
|
| Genus |
|
| Genus Synonyms |
|
| Species |
Planctomycetota bacterium AG-464-F06
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
AG-464-F06
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
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| Type Strain |
|
| Exemplar DOI |
|
| Exemplar Name |
|
| Taxon DOI |
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
No
|
| Culture Type |
|
| Organism Type |
Natural
|
| Uncultured Type |
Single Cell
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
2026780 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Planctomycetota
|
| NCBI Class |
|
| NCBI Order |
|
| NCBI Family |
|
| NCBI Genus |
|
| NCBI Species |
Planctomycetota bacterium
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Environmental
|
| Ecosystem Category |
Aquatic
|
| Ecosystem Type |
Marine
|
| Ecosystem Subtype |
Unclassified
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
|
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
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| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
|
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