PROJECT INFORMATION
GOLD Project ID
Gp0609126  
Project Name
Haloarcula sinaiiensis ATCC 33800  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Halobacterium
NCBI BioProject Accession PRJNA412908
NCBI Locus Tag
KDQ40  
NCBI BioSample Accession SAMN18811338
PI
Added By JGI automated process on 2021-12-23
Last Modified By JGI automated process on 2021-12-24
Project Comments
  
Project Status
Complete and Published  
Project Relevance Evolution
Sequencing Center University of Maryland (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Haloarcula sinaiiensis ATCC 33800 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications Microbiol Resour Announc 10(34):e0061921 Complete Genome and Methylome Analysis of the Box-Shaped Halophilic Archaeon Haloarcula sinaiiensis ATCC 33800.

Other Publications
  
Ignored Publications
  
Unassigned Publications Microbiol Resour Announc Species, Haloarcula marismortui and Haloferax mediterranei.

Experientia 49(6-7):482-6 Identification and analysis of the gas vesicle gene cluster on an unstable plasmid of Halobacterium halobium.

Show more publications...

Genome research 8(11):1131-41 Snapshot of a large dynamic replicon in a halophilic archaeon: megaplasmid or minichromosome?

Journal of bacteriology 173(12):3933 Structure of the gas vesicle plasmid in Halobacterium halobium inversion isomers, inverted repeats, and insertion sequences.

Biochim. Biophys. Acta 505(3-4):215-78 Bacteriorhodopsin and the purple membrane of halobacteria.

Saline systems HaloWeb: the haloarchaeal genomes database.

Extremophiles 24(1):31-41 Extremophilic models for astrobiology: haloarchaeal survival strategies and pigments for remote sensing.

Proceedings of the National Academy of Sciences of the United States of America 114(47):12530-12535 Key amino acid residues conferring enhanced enzyme activity at cold temperatures in an Antarctic polyextremophilic β-galactosidase.

BMC genomics The core and unique proteins of haloarchaea.

Gene 119(1):131-6 Genetic transformation of a halophilic archaebacterium with a gas vesicle gene cluster restores its ability to float.

Proceedings of the National Academy of Sciences of the United States of America 85(18):6861-5 High-frequency mutations in a plasmid-encoded gas vesicle gene in Halobacterium halobium.

Standards in genomic sciences 11(1):70 Complete genome sequence of the Antarctic Halorubrum lacusprofundi type strain ACAM 34.

Plasmid 65(2):77-101 The information transfer system of halophilic archaea.

Microbiol Resour Announc Genome Sequences and Methylation Patterns of Natrinema versiforme BOL5-4 and Natrinema pallidum BOL6-1, Two Extremely Halophilic Archaea from a Bolivian Salt Mine.

Journal of bacteriology 175(15):4584-96 Minimal replication origin of the 200-kilobase Halobacterium plasmid pNRC100.

Journal of bacteriology 176(24):7646-52 Wild-type gas vesicle formation requires at least ten genes in the gvp gene cluster of Halobacterium halobium plasmid pNRC100.

Gene 102(1):117-22 Structure and organization of the gas vesicle gene cluster on the Halobacterium halobium plasmid pNRC100.

Nucleic acids research 17(19):7785-93 Analysis of insertion mutants reveals two new genes in the pNRC100 gas vesicle gene cluster of Halobacterium halobium.

PloS one 8(3):e58587 Amino acid substitutions in cold-adapted proteins from Halorubrum lacusprofundi, an extremely halophilic microbe from antarctica.

Proceedings of the National Academy of Sciences of the United States of America Genome sequence of Halobacterium species NRC-1.

Saline systems On the origin of prokaryotic "species": the taxonomy of halophilic Archaea.

Microbiol Resour Announc sp. Strain JOR-1, an Extremely Halophilic Archaeon from the Dead Sea.

BMC biotechnology Cloning, overexpression, purification, and characterization of a polyextremophilic β-galactosidase from the Antarctic haloarchaeon Halorubrum lacusprofundi.

Molecular microbiology 1(3):365-70 A plasmid-encoded gas vesicle protein gene in a halophilic archaebacterium.

Microbiol Resour Announc 10(28):e0052021 sp. GSL-19.

Microbiol Resour Announc sp. Strain BOL3-1, the First Haloarchaeon Isolated and Cultured from Salar de Uyuni, Bolivia.

Astrobiology 18(4):412-418 An Antarctic Extreme Halophile and Its Polyextremophilic Enzyme: Effects of Perchlorate Salts.

Journal of bacteriology 175(3):684-92 The rightward gas vesicle operon in Halobacterium plasmid pNRC100: identification of the gvpA and gvpC gene products by use of antibody probes and genetic analysis of the region downstream of gvpC.

Microbiol Resour Announc Genome Sequence and Methylation Pattern of Haloterrigena salifodinae BOL5-1, an Extremely Halophilic Archaeon from a Bolivian Salt Mine.

Microbiol Resour Announc 10(48):e0104521 sp. Strain BOL4-2, Isolated and Cultured from Salar de Uyuni, Bolivia.

SRA Experiment
 
SRA Experiment Id SRX10654838  (Link to NCBI )
Experiment Title SMRT_Hsi
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Haloarcula_sinaiiensis_DasSarma_Grabovich_Fomenkov_411/C01_1
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX10654839  (Link to NCBI )
Experiment Title SMRT_Hsi
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Haloarcula_sinaiiensis_DasSarma_Grabovich_Fomenkov_411/C01_2
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX10654840  (Link to NCBI )
Experiment Title SMRT_Hsi
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Haloarcula_sinaiiensis_x4_DasSarma_Grabovich_Iain_Fomenkov_02_28_2015_404/G01_1
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX10654841  (Link to NCBI )
Experiment Title SMRT_Hsi
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Haloarcula_sinaiiensis_x10_DasSarma_Grabovich_Iain_Fomenkov_02_28_2015_404/H01_1
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX10654842  (Link to NCBI )
Experiment Title SMRT_Hsi_BP6_50
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Hsi_BP6_50-i4_Fomenkov_NEB_stains_DaSarma_01_15_16_546/G03_1
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX10654843  (Link to NCBI )
Experiment Title SMRT_Hsi_BP9_50
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Hsi_BP9_50_NS_Fomenkov_SBF_DasSarma_02_11-19_934/G03_1
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX10654844  (Link to NCBI )
Experiment Title SMRT_Hsi
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Hsi_Fomenkov_SBF_DasSarma_02_11-19_934/B03_1
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX10654836  (Link to NCBI )
Experiment Title SMRT_Hsi_BP6_50
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Haloarcula_sinaiiensis_BP6_50_Grabovich_DasSarma_Fomenkov_04_01_15_421/D01_1
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX10654837  (Link to NCBI )
Experiment Title SMRT_Hsi_BP6_50
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Haloarcula_sinaiiensis_BP6_50_Grabovich_DasSarma_Fomenkov_04_01_15_421/D01_2
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
PROJECT COMPOSITION
Study Origin of Prokaryotic Species: Haloarchaeal Genomes Sequencing Project
Organism Haloarcula sinaiiensis ATCC 33800
Analysis Projects Haloarcula sinaiiensis ATCC 33800
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) PacBio RSII
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0595181
Organism Name
Haloarcula sinaiiensis ATCC 33800  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
ARCHAEAL  
Phylogeny
EURYARCHAEOTA-HALOBACTERIA  
Genus
Haloarcula  
Genus Synonyms
  
Species
Haloarcula sinaiiensis  
Subspecies
  
Species Synonyms
  
Strain
ATCC 33800  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
ATCC 33800  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 662476
NCBI Superkingdom
Archaea  
NCBI Kingdom
  
NCBI Phylum
Euryarchaeota  
NCBI Class
Halobacteria  
NCBI Order
Halobacteriales  
NCBI Family
Haloarculaceae  
NCBI Genus
Haloarcula  
NCBI Species
Haloarcula sinaiiensis  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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