PROJECT INFORMATION
GOLD Project ID
Gp0607898  
Project Name
Rickettsia parkeri Black Gap  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Rickettsia parkeri Black Gap
NCBI BioProject Accession PRJNA699590
NCBI Locus Tag
JRD95  
NCBI BioSample Accession SAMN17799550
PI Unknown
Added By JGI automated process on 2021-12-23
Last Modified By Supratim Mukherjee on 2022-01-05
Project Comments
  
Project Status
Complete and Published  
Project Relevance Medical
Sequencing Center Old Dominion University
Collaborating Institute
  
Funding Agency
  
Project Description
Rickettsia parkeri Black Gap genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX11042663  (Link to NCBI )
Experiment Title Rickettsia parkeri Black Gap
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name RpBG
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX12237563  (Link to NCBI )
Experiment Title Illumina reads for Rickettsia parkeri strain Black Gap
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name RpBG1
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
 
SRA Experiment Id SRX12237564  (Link to NCBI )
Experiment Title Illumina reads for Rickettsia parkeri strain Black Gap
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name RpBG3
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
PROJECT COMPOSITION
Study Rickettsia parkeri Black Gap genome sequencing
Organism Rickettsia parkeri Black Gap
Analysis Projects Rickettsia parkeri Black Gap
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) PacBio Sequel
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0593953
Organism Name
Rickettsia parkeri Black Gap  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Rickettsia  
Genus Synonyms
  
Species
Rickettsia parkeri  
Subspecies
  
Species Synonyms
  
Strain
Black Gap  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 35792
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rickettsiales  
NCBI Family
Rickettsiaceae  
NCBI Genus
Rickettsia  
NCBI Species
Rickettsia parkeri  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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