Studies
|
56,336 |
|
Biosamples
|
196,971 |
|
Sequencing Projects
|
525,344 |
|
Analysis Projects
|
385,119 |
| Organisms | 484,224 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0606713
|
|
Project Name
|
Pantoea dispersa Colony148
|
|
Other Names
|
|
|
Legacy GOLD ID
|
|
| NCBI BioProject Name | Salmonella enterica, Vibrio parahaemolyticu, Staphylococcus aureus, Streptococcus pyo, Streptococcus suis, Aeromonas hydrophila , Edwardsiella tarda, Samonella serotype, Edwardsiella tarda, Escherichia coli, Klebsiella pneumoniae, Bacillus cereus, Listeria monocytogenas, Streptococcus spp. |
|
NCBI BioProject Accession
|
PRJNA668870 |
|
NCBI Locus Tag
|
JV214
|
|
NCBI BioSample Accession
|
SAMN17917273 |
|
Source Sample ID
|
|
| PI | Unknown |
| Added By | JGI automated process on 2021-12-23 |
| Last Modified By | JGI automated process on 2021-12-24 |
| Project Comments |
|
|
Project Status
|
Complete and Published
|
|
Project Relevance
|
|
|
Sequencing Center
|
Ministry of Public Health-Thailand
|
|
Collaborating Institute
|
|
|
Funding Agency
|
|
|
Project Description
|
Whole genome Sequencing for food-borne outbreaks in Thailand
|
| Is JGI Project |
No
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
JGI Data Utilization Status
|
|
|
JGI Award DOI
|
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Genome Publications
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|
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Other Publications
|
|
|
Ignored Publications
|
|
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Unassigned Publications
|
|
| SRA Experiment |
|
| PROJECT COMPOSITION | |
| Study |
Establishment capacity for Whole genome Sequencing for food-borne outbreaks in Thailand |
| Organism |
Pantoea dispersa Colony148 |
| Analysis Projects |
Pantoea dispersa Colony148 |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 6: Finished |
|
Finishing Goal
|
|
|
Contamination Screening Input
|
|
|
DNA Amplification Method
|
|
|
Single Cell Lysis Protocol
|
|
|
Single Cell Lysis Approach
|
|
|
Sequencing Comments
|
|
|
DNA Amplification Kit
|
|
|
Sequencing Technology
(MIGS-29)
|
Illumina HiSeq |
|
Library Method
(MIGS-28)
|
|
|
Library Layout
|
|
|
Library Screening Method
|
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
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| Chromosome Count |
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| Plasmid Count |
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0592768 |
| Organism Name |
Pantoea dispersa Colony148
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
PROTEOBACTERIA-GAMMA
|
| Genus |
Pantoea
|
| Genus Synonyms |
|
| Species |
Pantoea dispersa
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
Colony148
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
|
| Type Strain |
|
| Exemplar DOI |
|
| Exemplar Name |
|
| Taxon DOI |
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
59814 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Pseudomonadota
|
| NCBI Class |
Gammaproteobacteria
|
| NCBI Order |
Enterobacterales
|
| NCBI Family |
Erwiniaceae
|
| NCBI Genus |
Pantoea
|
| NCBI Species |
Pantoea dispersa
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Host-associated
|
| Ecosystem Category |
Mammals: Human
|
| Ecosystem Type |
Digestive system
|
| Ecosystem Subtype |
Large intestine
|
| Specific Ecosystem |
Rectum
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
|
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
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| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
|
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