PROJECT INFORMATION
GOLD Project ID
Gp0603545  
Project Name
Methanoculleus chikugoensis MG62  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Methanoculleus chikugoensis MG62
NCBI BioProject Accession PRJDB8303
NCBI Locus Tag
MchiMG62  
NCBI BioSample Accession SAMD00171896
PI
Added By JGI automated process on 2021-12-22
Last Modified By Supratim Mukherjee on 2022-01-05
Project Comments
  
Project Status
Complete and Published  
Project Relevance Agricultural
Sequencing Center Nagoya University
Collaborating Institute
  
Funding Agency
  
Project Description
Methanoculleus chikugoensis MG62 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id DRX170133  (Link to NCBI )
Experiment Title Illumina MiSeq paired end sequencing of SAMD00171896
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name JCM10825
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
 
SRA Experiment Id DRX170132  (Link to NCBI )
Experiment Title GridION sequencing of SAMD00171896
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name JCM10825_Nanopore
Library Layout SINGLE
Library Instrument GRID_ION
PROJECT COMPOSITION
Study Methanoculleus chikugoensis MG62 genome sequencing
Organism Methanoculleus chikugoensis MG62
Analysis Projects Methanoculleus chikugoensis MG62
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina MiSeq, GridION
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0589599
Organism Name
Methanoculleus chikugoensis MG62  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
ARCHAEAL  
Phylogeny
EURYARCHAEOTA-METHANOMICROBIA  
Genus
Methanoculleus  
Genus Synonyms
  
Species
Methanoculleus chikugoensis  
Subspecies
  
Species Synonyms
  
Strain
MG62  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 118126
NCBI Superkingdom
Archaea  
NCBI Kingdom
  
NCBI Phylum
Euryarchaeota  
NCBI Class
Methanomicrobia  
NCBI Order
Methanomicrobiales  
NCBI Family
Methanomicrobiaceae  
NCBI Genus
Methanoculleus  
NCBI Species
Methanoculleus chikugoensis  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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