PROJECT INFORMATION
GOLD Project ID
Gp0600542  
Project Name
Soil microbial communities from microcosm in Los Alamos National Laboratory, New Mexico, USA - APFL1R3_bacteriaseqs  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Impact of microbial community invasions on community composition
NCBI BioProject Accession PRJNA557183
NCBI Locus Tag
  
NCBI BioSample Accession SAMN12510799
Source Sample ID
PI Unknown
Added By JGI automated process on 2021-12-17
Last Modified By
Project Comments
  
Project Status
incomplete  
Project Relevance Environmental
Sequencing Center Los Alamos National Laboratory (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Soil microbial communities from microcosm in Los Alamos National Laboratory, New Mexico, USA; resident community microcosms on nutrient-rich environment consisting of R2A agar medium containing diverse carbon sources  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX6665434  (Link to NCBI )
Experiment Title DNA extraction followed by amplification with 16s primers and Illumina MiSeq sequencing
Exp Library Strategy OTHER
Library Source METAGENOMIC
Library Selection PCR
Library Name APFL1R3_bacteriaseqs
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
PROJECT COMPOSITION
Study Soil microbial and fungal communities from microcosms in Los Alamos National Laboratory, New Mexico, USA
Biosample Soil microbial communities from microcosm in Los Alamos National Laboratory, New Mexico, USA - APFL1R3_bacteriaseqs
Analysis Projects
  
Number of Analysis Projects (AP) 0
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status In progress
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Soil microbial communities from microcosm in Los Alamos National Laboratory, New Mexico, USA - APFL1R3_bacteriaseqs
Other Names (alias, synonyms, short names)
  
Sample Description
Soil microbial communities from microcosm in Los Alamos National Laboratory, New Mexico, USA; resident community microcosms on nutrient-rich environment consisting of R2A agar medium containing diverse carbon sources  
SAMPLE TAXONOMY
NCBI Taxonomy ID 410658
GOLD CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Artificial ecosystem  
Ecosystem Type
Nutrient-rich  
Ecosystem Subtype
R2A agar  
Specific Ecosystem
  

 

 

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