PROJECT INFORMATION
GOLD Project ID
Gp0595292  
Project Name
Metatranscriptome of microalgae axenic culture microbial communities from LLNL, Livermore, California, USA - f18_d2_W_S27  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name
  
NCBI BioProject Accession
NCBI Locus Tag
  
NCBI BioSample Accession
PI Xavier Mayali
Added By JGI automated process on 2021-11-12
Last Modified By JGI automated process on 2022-03-23
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Metatranscriptome of microalgae axenic culture microbial communities from LLNL, Livermore, California, USA; day 2  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid RNA
Sequencing Strategy
Metatranscriptome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
Restricted  
JGI Award DOI 10.46936/10.25585/60001054
JGI Portal Download Raw Sequence Data
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Phycosphere-associated microbial communities from algal ponds
Biosample Microalgae axenic culture microbial communities from LLNL, Livermore, California, USA - f18_d2_W_S27
Analysis Projects Metatranscriptome of microalgae axenic culture microbial communities from LLNL, Livermore, California, USA - f18_d2_W_S27 (Metagenome Metatranscriptome Expression - Self)
Metatranscriptome of microalgae axenic culture microbial communities from LLNL, Livermore, California, USA - f18_d2_W_S27 (Metagenome Metatranscriptome)
Number of Analysis Projects (AP) 2
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina NovaSeq S4
Library Method (MIGS-28)
Illumina Low Input RNASeq w/rRNA Depletion, Plates  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Microalgae axenic culture microbial communities from LLNL, Livermore, California, USA - f18_d2_W_S27
Other Names (alias, synonyms, short names)
  
Sample Description
Microalgae axenic culture microbial communities from LLNL, Livermore, California, USA; day 2  
SAMPLE TAXONOMY
NCBI Taxonomy ID 1300146
GOLD CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Algae  
Ecosystem Type
Diatoms  
Ecosystem Subtype
  
Specific Ecosystem
  

 

 

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