PROJECT INFORMATION
GOLD Project ID
Gp0592452  
Project Name
Metatranscriptome of seawater microbial communities from Mount Hope Bay, Rhode Island, USA - RI_1B2_100118_1351  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name
  
NCBI BioProject Accession
NCBI Locus Tag
  
NCBI BioSample Accession
Source Sample ID
PI Eric Wommack
Added By JGI automated process on 2021-10-15
Last Modified By JGI automated process on 2022-07-30
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Metatranscriptome of seawater microbial communities from Mount Hope Bay, Rhode Island, USA  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid RNA
Sequencing Strategy
Metatranscriptome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
Unrestricted  
JGI Award DOI 10.46936/10.25585/60000489
JGI Portal Download Raw Sequence Data
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Water microbial communities from various aquatic ecosystems in USA and North Atlantic Ocean
Biosample Seawater microbial communities from Mount Hope Bay, Rhode Island, USA - RI_1B2_100118_1351
Analysis Projects Metatranscriptome of seawater microbial communities from Mount Hope Bay, Rhode Island, USA - RI_1B2_100118_1351 (Metagenome Metatranscriptome)
Metatranscriptome of seawater microbial communities from Mount Hope Bay, Rhode Island, USA - RI_1B2_100118_1351 (Metagenome Metatranscriptome Expression - Self)
Number of Analysis Projects (AP) 2
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina NovaSeq S4
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Seawater microbial communities from Mount Hope Bay, Rhode Island, USA - RI_1B2_100118_1351
Other Names (alias, synonyms, short names)
  
Sample Description
Seawater microbial communities from Mount Hope Bay, Rhode Island, USA  
SAMPLE TAXONOMY
NCBI Taxonomy ID 1561972
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Intertidal zone  
Specific Ecosystem
Estuary  
EXPERIMENT
Experimental Conditions
  

 

 

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