PROJECT INFORMATION
GOLD Project ID
Gp0590536  
Project Name
Metatranscriptome of woodchip biofilm fungal communities from lab scale WBRs in New York, USA - hf_cs_p2_t0_h0_fungi  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name
  
NCBI BioProject Accession
NCBI Locus Tag
  
NCBI BioSample Accession
PI Matthew Reid
Added By JGI automated process on 2021-09-24
Last Modified By JGI automated process on 2021-11-05
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Metatranscriptome of woodchip biofilm fungal communities from lab scale WBR in Cornell University, Ithaca, NY, USA; operated under continuous saturation  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid RNA
Sequencing Strategy
Metatranscriptome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
Unrestricted  
JGI Portal Download Raw Sequence Data
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Woodchip biofilm microbial communities from lab scale and field WBRs in New York, USA
Biosample Woodchip biofilm fungal communities from lab scale WBRs in New York, USA - hf_cs_p2_t0_h0_fungi
Analysis Projects Metatranscriptome of woodchip biofilm fungal communities from lab scale WBRs in New York, USA - hf_cs_p2_t0_h0_fungi (Eukaryote Community Metatranscriptome)
Metatranscriptome of woodchip biofilm fungal communities from lab scale WBRs in New York, USA - hf_cs_p2_t0_h0_fungi (Eukaryote Community Metatranscriptome Expression - Self)
Number of Analysis Projects (AP) 2
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status In progress
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina NovaSeq S4
Library Method (MIGS-28)
Illumina RNASeq w/PolyA Selection, Tubes  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Woodchip biofilm fungal communities from lab scale WBRs in New York, USA - hf_cs_p2_t0_h0_fungi
Other Names (alias, synonyms, short names)
  
Sample Description
Woodchip biofilm fungal communities from lab scale WBR in Cornell University, Ithaca, NY, USA; operated under continuous saturation  
SAMPLE TAXONOMY
NCBI Taxonomy ID 1076179
GOLD CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Bioreactor  
Ecosystem Type
Denitrification  
Ecosystem Subtype
Woodchip Bioreactor (WBR)  
Specific Ecosystem
Woodchip biofilm  

 

 

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