PROJECT INFORMATION
GOLD Project ID
Gp0589625  
Project Name
Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_4  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name
  
NCBI BioProject Accession
NCBI Locus Tag
  
NCBI BioSample Accession
Source Sample ID
PI Mary Ann Moran
Added By JGI automated process on 2021-09-10
Last Modified By JGI automated process on 2022-09-03
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Metatranscriptome of seawater microbial communities exposed to the metabolite pool of Thalassiosira pseudonana; 14C endo fraction  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid RNA
Sequencing Strategy
Metatranscriptome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
Unrestricted  
JGI Award DOI 10.46936/10.25585/60001361
JGI Portal Download Raw Sequence Data
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA
Biosample Lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_4
Analysis Projects Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_4 (Metagenome Metatranscriptome)
Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_4 (Metagenome Metatranscriptome Expression - Self)
Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_4 (Metagenome Metatranscriptome)
Metatranscriptome of lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_4 (Metagenome Metatranscriptome Expression - Self) (v5.1 annotation)
Number of Analysis Projects (AP) 4
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina NovaSeq S4
Library Method (MIGS-28)
Illumina Low Input RNASeq w/rRNA Depletion, Plates  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Lab enriched seawater microbial communities from the coast of Sapelo Island, Georgia, USA - T. pseudonana natural community EXP01_4
Other Names (alias, synonyms, short names)
  
Sample Description
Seawater microbial communities exposed to the metabolite pool of Thalassiosira pseudonana; 14C endo fraction  
SAMPLE TAXONOMY
NCBI Taxonomy ID 1561972
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Coastal  
Specific Ecosystem
  
EXPERIMENT
Experimental Conditions
  

 

 

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