PROJECT INFORMATION
GOLD Project ID
Gp0585026  
Project Name
Metatranscriptome of freshwater microbial communities from kettle hole in arable in Uckermark, Germany - R78  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Kettle_Holes_BIBS_Metatranscriptomics
NCBI BioProject Accession PRJNA640812
NCBI Locus Tag
  
NCBI BioSample Accession SAMN15332885
PI Unknown
Added By JGI automated process on 2021-07-28
Last Modified By
Project Comments
  
Project Status
incomplete  
Project Relevance Environmental
Sequencing Center Leibniz Institute of Freshwater Ecology and Inland Fisheries
Collaborating Institute
  
Funding Agency
  
Project Description
Metatranscriptome of freshwater microbial communities from kettle hole in arable in Uckermark, Germany  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid RNA
Sequencing Strategy
Metatranscriptome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX8591448  (Link to NCBI )
Experiment Title Metatranscriptomes of water from kettle hole E collected in June-2017
Exp Library Strategy RNA_SEQ
Library Source METATRANSCRIPTOMIC
Library Selection RANDOM
Library Name R78
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
PROJECT COMPOSITION
Study Freshwater microbial communities from kettle holes in various lands in Uckermark, Germany
Biosample Freshwater microbial communities from kettle hole in arable in Uckermark, Germany - R78
Analysis Projects
  
Number of Analysis Projects (AP) 0
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status In progress
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Freshwater microbial communities from kettle hole in arable in Uckermark, Germany - R78
Other Names (alias, synonyms, short names)
  
Sample Description
Freshwater microbial communities from kettle hole in arable in Uckermark, Germany  
SAMPLE TAXONOMY
NCBI Taxonomy ID 449393
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Kettle hole  
Specific Ecosystem
  
EXPERIMENT
Experimental Conditions
  

 

 

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