PROJECT INFORMATION
GOLD Project ID
Gp0571297  
Project Name
Hydrogenimonas urashimensis SSM-sur55  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Hydrogenimonas urashimensis SSM-sur55
NCBI BioProject ID 685052
NCBI BioProject Accession PRJDB9990
NCBI Locus Tag
JMG82  
NCBI BioSample Accession SAMD00229896
PI Paul Nicolopoulos
Added By Paul Nicolopoulos on 2021-06-24
Last Modified By Supratim Mukherjee on 2021-08-12
Project Comments
  
Project Status
Complete and Published  
Project Relevance
  
Sequencing Center Hokkaido University (Japan)
Collaborating Institute
  
Funding Agency
  
Project Description
Genome sequencing of Hydrogenimonas urashimensis SSM-sur55  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Genome Publications Systematic and applied microbiology 44(1):126170 Hydrogenimonas urashimensis sp. nov., a hydrogen-oxidizing chemolithoautotroph isolated from a deep-sea hydrothermal vent in the Southern Mariana Trough.

Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Hydrogenimonas urashimensis SSM-sur55
Organism Hydrogenimonas urashimensis SSM-sur55
Analysis Projects Hydrogenimonas urashimensis SSM-sur55
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina MiSeq
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0581395
Organism Name
Hydrogenimonas urashimensis SSM-sur55  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-EPSILON  
Genus
Hydrogenimonas  
Genus Synonyms
  
Species
Hydrogenimonas urashimensis  
Subspecies
  
Species Synonyms
  
Strain
SSM-sur55  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 2740515
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Epsilonproteobacteria  
NCBI Order
Campylobacterales  
NCBI Family
Hydrogenimonaceae  
NCBI Genus
Hydrogenimonas  
NCBI Species
Hydrogenimonas urashimensis  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Hydrothermal vents  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
5.3  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Marine
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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