PROJECT INFORMATION
GOLD Project ID
Gp0568505  
Project Name
Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA - TD10  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name
  
NCBI BioProject ID
NCBI BioProject Accession
NCBI Locus Tag
  
NCBI BioSample Accession
PI Vanessa Bailey
Added By JGI automated process on 2021-05-28
Last Modified By JGI automated process on 2021-08-03
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Sand and pine needle microcosm inoculated with diluted soil extract; 90 day 25C incubation  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA
Biosample Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA - TD10
Analysis Projects Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA - TD10
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status In progress
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina NovaSeq S4
Library Method (MIGS-28)
Illumina Nextera with Size Selection, Plates; Illumina Regular Fragment, 300bp, Plates; Illumina Low Input Fragment, 300bp, Plates  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Soil microbial communities from microcosm experiment in Pacific Northwest National Lab, Richland, Washington, USA - TD10
Other Names (alias, synonyms, short names)
  
Sample Description
Sand and pine needle microcosm inoculated with diluted soil extract; 90 day 25C incubation  
SAMPLE TAXONOMY
NCBI Taxonomy ID 410658
GOLD CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Artificial ecosystem  
Ecosystem Type
Soil microcosm  
Ecosystem Subtype
  
Specific Ecosystem
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?

 

 

 

 

 

  Changing the SP Sequencing Strategy will also effect these items:

 

Do you want to continue with this Sequencing Strategy change?