Studies
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56,336 |
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Biosamples
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196,965 |
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Sequencing Projects
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525,338 |
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Analysis Projects
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385,100 |
| Organisms | 484,222 |
| PROJECT INFORMATION | |
|---|---|
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GOLD Project ID
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Gp0565576
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Project Name
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Ruegeria pomeroyi DSS-3 Thalassiosira pseudonana co-culture transcriptome - Rpom_6
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Other Names
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Legacy GOLD ID
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| NCBI BioProject Name |
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NCBI BioProject Accession
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NCBI Locus Tag
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NCBI BioSample Accession
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Source Sample ID
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| PI | Mary Ann Moran |
| Added By | JGI automated process on 2021-04-23 |
| Last Modified By | JGI automated process on 2022-07-23 |
| Project Comments |
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Project Status
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incomplete
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Project Relevance
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Sequencing Center
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DOE Joint Genome Institute (JGI)
(USA)
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Collaborating Institute
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Funding Agency
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U.S. Department of Energy (DOE)
(USA)
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Project Description
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Transcriptome sequencing of prokaryotic fraction of Ruegeria pomeroyi DSS-3 from a Thalassiosira pseudonana/Ruegeria pomeroyi co-culture. Grown at 20 degrees
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| Is JGI Project |
Yes
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Project Information Visibility
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Public |
| PROJECT TYPE | |
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Specimen
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Organism |
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Nucleic Acid
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RNA |
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Sequencing Strategy
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Transcriptome
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| EXTERNAL PROJECT LINKS | |
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JGI Data Utilization Status
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Unrestricted
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JGI Award DOI
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10.46936/10.25585/60001361 |
| JGI Portal Download | Raw Sequence Data |
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Genome Publications
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Other Publications
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Ignored Publications
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Unassigned Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |
| Study |
Lab enriched bacterioplankton communities from estuarine and coastal waters, from Southeastern USA |
| Organism |
Ruegeria pomeroyi DSS-3 |
| Analysis Projects |
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| Number of Analysis Projects (AP) |
0 |
| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
|---|---|
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Sequencing Status
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Complete |
| Sequencing Quality (MIGS-31) |
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Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Illumina NovaSeq S4 |
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Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
64
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0000514 |
| Organism Name |
Ruegeria pomeroyi DSS-3
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| Other names (alias, synonyms, short names, common names) |
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| Organism Domain |
BACTERIAL
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| Phylogeny |
PSEUDOMONADOTA
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| Genus |
Ruegeria
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| Genus Synonyms |
Silicibacter
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| Species |
Ruegeria pomeroyi
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| Subspecies |
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| Species Synonyms |
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| Strain |
DSS-3
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| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
ATCC 700808
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| Type Strain |
Yes
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| Exemplar DOI |
10.1601/ex.1152
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| Exemplar Name |
Ruegeria pomeroyi
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| Taxon DOI |
10.1601/tx.11006
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| Biosafety Level |
1
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| Organism Comments |
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| Cultured |
Yes
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| Culture Type |
Isolate
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| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
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| NCBI Taxonomy ID |
246200 |
| NCBI Superkingdom |
Bacteria
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| NCBI Kingdom |
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| NCBI Phylum |
Pseudomonadota
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| NCBI Class |
Alphaproteobacteria
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| NCBI Order |
Rhodobacterales
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| NCBI Family |
Roseobacteraceae
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| NCBI Genus |
Ruegeria
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| NCBI Species |
Ruegeria pomeroyi
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| ISOLATION CLASSIFICATION | |
| Ecosystem |
Environmental
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| Ecosystem Category |
Aquatic
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| Ecosystem Type |
Marine
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| Ecosystem Subtype |
Unclassified
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| Specific Ecosystem |
Unclassified
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
118527 |
| Genbank 16S ID |
AF098491 |
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
Aerobe
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| Cell Shape |
Rod-shaped
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| Motility |
Motile
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| Sporulation |
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| Temperature Range |
Mesophile
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
Gram-
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| Biotic Relationships | Free living |
| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
None |
| Known Habitats |
Aquatic Fresh water |
| Metabolisms |
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| Phenotypes |
Sulfur cycle |
| Energy Sources |
Heterotroph |
| EXPERIMENT | |
|---|---|
| Experimental Conditions |
|
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