PROJECT INFORMATION
GOLD Project ID
Gp0564627  
Project Name
Human gut associated microbial communities from individual in University of Tokyo, Japan - FAKO29  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Metagenomics of Japanese gut microbiomes
NCBI BioProject ID 314752
NCBI BioProject Accession PRJDB3601
NCBI Locus Tag
  
NCBI BioSample Accession SAMD00036217
PI
Added By JGI automated process on 2021-04-13
Last Modified By
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center The University of Tokyo
Collaborating Institute
  
Funding Agency
  
Project Description
Human gut associated microbial communities from individual in University of Tokyo, Japan  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id DRX038123  (Link to NCBI )
Experiment Title Illumina MiSeq paired end sequencing of SAMD00036217
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection RANDOM
Library Name (null)
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
 
SRA Experiment Id DRX038122  (Link to NCBI )
Experiment Title Illumina MiSeq paired end sequencing of SAMD00036217
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection RANDOM
Library Name (null)
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
 
SRA Experiment Id DRX038125  (Link to NCBI )
Experiment Title Ion Torrent PGM sequencing of SAMD00036217
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection RANDOM
Library Name (null)
Library Layout SINGLE
Library Instrument ION_TORRENT_PGM
 
SRA Experiment Id DRX038124  (Link to NCBI )
Experiment Title 454 GS FLX+ sequencing of SAMD00036217
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection RANDOM
Library Name (null)
Library Layout SINGLE
Library Instrument 454 GS FLX+
PROJECT COMPOSITION
Study Fecal microbial communities from healthy individuals in Azabu University, Sagamihara, Japan
Biosample Human gut associated microbial communities from individual in University of Tokyo, Japan - FAKO29
Analysis Projects
  
Number of Analysis Projects (AP) 0
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status In progress
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Human gut associated microbial communities from individual in University of Tokyo, Japan - FAKO29
Other Names (alias, synonyms, short names)
  
Sample Description
Human gut associated microbial communities from individual in University of Tokyo, Japan  
SAMPLE TAXONOMY
NCBI Taxonomy ID 408170
GOLD CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Large intestine  
Specific Ecosystem
  

 

 

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