PROJECT INFORMATION
GOLD Project ID
Gp0564208  
Project Name
Fecal microbial communities from an individual in Nur-Sultan, Kazakhstan - pluto2-11-0-0  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Subspecies in the global human gut microbiome
NCBI BioProject Accession PRJEB17632
NCBI Locus Tag
  
NCBI BioSample Accession SAMEA4545539
PI
Added By JGI automated process on 2021-04-12
Last Modified By
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center European Molecular Biology Laboratory (EMBL)
Collaborating Institute
  
Funding Agency
  
Project Description
Fecal microbial communities from an individual in Nur-Sultan, Kazakhstan  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
Genome Publications
  
Other Publications Nat Microbiol 6(7):960-970 Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome.

Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id ERX1797599  (Link to NCBI )
Experiment Title Illumina HiSeq 2000 paired end sequencing
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection unspecified
Library Name unspecified
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
 
SRA Experiment Id ERX1798721  (Link to NCBI )
Experiment Title Illumina HiSeq 2000 sequencing
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection unspecified
Library Name unspecified
Library Layout SINGLE
Library Instrument ILLUMINA_HI_SEQ_2000
 
SRA Experiment Id ERX1797598  (Link to NCBI )
Experiment Title Illumina HiSeq 2000 paired end sequencing
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection unspecified
Library Name unspecified
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
 
SRA Experiment Id ERX1798720  (Link to NCBI )
Experiment Title Illumina HiSeq 2000 sequencing
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection unspecified
Library Name unspecified
Library Layout SINGLE
Library Instrument ILLUMINA_HI_SEQ_2000
 
SRA Experiment Id ERX1797597  (Link to NCBI )
Experiment Title Illumina HiSeq 2000 paired end sequencing
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection unspecified
Library Name unspecified
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
 
SRA Experiment Id ERX1797596  (Link to NCBI )
Experiment Title Illumina HiSeq 2000 paired end sequencing
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection unspecified
Library Name unspecified
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
 
SRA Experiment Id ERX1798719  (Link to NCBI )
Experiment Title Illumina HiSeq 2000 sequencing
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection unspecified
Library Name unspecified
Library Layout SINGLE
Library Instrument ILLUMINA_HI_SEQ_2000
 
SRA Experiment Id ERX1798718  (Link to NCBI )
Experiment Title Illumina HiSeq 2000 sequencing
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection unspecified
Library Name unspecified
Library Layout SINGLE
Library Instrument ILLUMINA_HI_SEQ_2000
PROJECT COMPOSITION
Study Fecal microbial communities from individuals in Nur-Sultan, Kazakhstan
Biosample Fecal microbial communities from an individual in Nur-Sultan, Kazakhstan - pluto2-11-0-0
Analysis Projects Fecal microbial communities from an individual in Nur-Sultan, Kazakhstan - pluto2-11-0-0
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Fecal microbial communities from an individual in Nur-Sultan, Kazakhstan - pluto2-11-0-0
Other Names (alias, synonyms, short names)
  
Sample Description
Fecal microbial communities from an individual in Nur-Sultan, Kazakhstan  
SAMPLE TAXONOMY
NCBI Taxonomy ID 408170
GOLD CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mammals: Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Large intestine  
Specific Ecosystem
Fecal  

 

 

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