PROJECT INFORMATION
GOLD Project ID
Gp0551443  
Project Name
Mycolicibacterium duvalii JCM 6396  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Mycobacterium
NCBI BioProject Accession PRJDB7717
NCBI Locus Tag
G6N31  
NCBI BioSample Accession SAMD00153169
PI
Added By JGI automated process on 2021-03-12
Last Modified By JGI automated process on 2021-03-19
Project Comments
  
Project Status
Complete and Published  
Project Relevance
  
Sequencing Center Osaka University (Japan)
Collaborating Institute
  
Funding Agency
  
Project Description
Mycolicibacterium duvalii JCM 6396 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications Emerg Microbes Infect 8(1):1043-1053 Comprehensive subspecies identification of 175 nontuberculous mycobacteria species based on 7547 genomic profiles.

Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id DRX151879  (Link to NCBI )
Experiment Title MinION single end sequencing of SAMD00153169
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Layout SINGLE
Library Instrument MIN_ION
 
SRA Experiment Id DRX151816  (Link to NCBI )
Experiment Title Illumina HiSeq 2500 paired end sequencing of SAMD00153169
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
PROJECT COMPOSITION
Study Genome sequencing of nontuberculosis mycobacteria
Organism Mycolicibacterium duvalii JCM 6396
Analysis Projects Mycolicibacterium duvalii JCM 6396
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Oxford Nanopore Technologies MinION
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0576667
Organism Name
Mycolicibacterium duvalii JCM 6396  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Mycolicibacterium  
Genus Synonyms
  
Species
Mycolicibacterium duvalii  
Subspecies
  
Species Synonyms
  
Strain
JCM 6396  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
JCM 6396  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 39688
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinomycetia  
NCBI Order
Corynebacteriales  
NCBI Family
Mycobacteriaceae  
NCBI Genus
Mycolicibacterium  
NCBI Species
Mycolicibacterium duvalii  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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