PROJECT INFORMATION
GOLD Project ID
Gp0551142  
Project Name
Wolbachia endosymbiont TRS of Brugia malayi  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Wolbachia sp
NCBI BioProject Accession PRJNA508212
NCBI Locus Tag
EJB10  
NCBI BioSample Accession SAMN10519683
Source Sample ID
PI Unknown
Added By JGI automated process on 2021-03-12
Last Modified By JGI automated process on 2021-03-19
Project Comments
  
Project Status
Complete and Published  
Project Relevance Evolution
Sequencing Center New England Biolabs (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Wolbachia endosymbiont TRS of Brugia malayi genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications Scientific reports: 9(1):5939 Large Enriched Fragment Targeted Sequencing (LEFT-SEQ) Applied to Capture of Wolbachia Genomes.
PubMed: 30976027 DOI: 10.1038/s41598-019-42454-w
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX5098111  (Link to NCBI )
Experiment Title PacBio RSII Brugia malayi with LEFT-SEQ Wolbachia capture
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name captured_BM_lib3c
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5098110  (Link to NCBI )
Experiment Title PacBio RSII Brugia malayi without selection
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name uncaptured_BM_lib1
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
PROJECT COMPOSITION
Study Wolbachia endosymbiont of Aedes albopictus wAlbB genome sequencing
Organism Wolbachia endosymbiont TRS of Brugia malayi
Analysis Projects Wolbachia endosymbiont TRS of Brugia malayi
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) PacBio RSII
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0000498
Organism Name
Wolbachia endosymbiont TRS of Brugia malayi  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Wolbachia  
Genus Synonyms
  
Species
Wolbachia endosymbiont of Brugia malayi  
Subspecies
  
Species Synonyms
  
Strain
TRS  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 292805
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rickettsiales  
NCBI Family
Anaplasmataceae  
NCBI Genus
Wolbachia  
NCBI Species
Wolbachia endosymbiont of Brugia malayi  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Arthropoda: Insects  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Coccus-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Symbiotic
Symbiotic Physical Interaction
Endosymbiotic intracellular  
Symbiotic Relationship
Parasitic  
Symbiont Name
Brugia malayi  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases None
Known Habitats Host
Endosymbiont
Nematode endosymbiont
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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