PROJECT INFORMATION
GOLD Project ID
Gp0551100  
Project Name
Dehalogenimonas sp. GP  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Dehalogenimonas sp. GP strain:GP
NCBI BioProject Accession PRJNA258024
NCBI Locus Tag
HX448  
NCBI BioSample Accession SAMN15398252
Source Sample ID
PI Unknown
Added By JGI automated process on 2021-03-12
Last Modified By JGI automated process on 2021-03-19
Project Comments
  
Project Status
Complete and Published  
Project Relevance Environmental
Sequencing Center University of Tennessee, Knoxville (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Dehalogenimonas sp. GP genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications The ISME journal: 11(12):2767-2780 Grape pomace compost harbors organohalide-respiring Dehalogenimonas species with novel reductive dehalogenase genes.
PubMed: 28809851 DOI: 10.1038/ismej.2017.127
SRA Experiment
 
SRA Experiment Id SRX9245244  (Link to NCBI )
Experiment Title Dhgm GP Illumina Sequencing
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM PCR
Library Name Dhgm.L350_FDSW202383732-1r
Library Layout PAIRED
 
SRA Experiment Id SRX9245243  (Link to NCBI )
Experiment Title Dhgm GP NanoPore Sequenceing
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM PCR
Library Name barcode23.fastq
Library Layout SINGLE
Library Instrument PROMETH_ION
PROJECT COMPOSITION
Study Dehalogenimonas sp. GP genome sequencing
Organism Candidatus Dehalogenimonas etheniformans GP
Analysis Projects Dehalogenimonas sp. GP
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina NovaSeq
Oxford Nanopore
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0495132
Organism Name
Candidatus Dehalogenimonas etheniformans GP  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
CHLOROFLEXOTA  
Genus
Candidatus Dehalogenimonas  
Genus Synonyms
  
Species
Candidatus Dehalogenimonas etheniformans  
Subspecies
  
Species Synonyms
  
Strain
GP  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1536648
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Chloroflexota  
NCBI Class
Dehalococcoidia  
NCBI Order
  
NCBI Family
  
NCBI Genus
Dehalogenimonas  
NCBI Species
Dehalogenimonas etheniformans  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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