Studies
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52,460 |
|
Biosamples
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170,240 |
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Sequencing Projects
|
472,574 |
|
Analysis Projects
|
360,348 |
| Organisms | 460,439 |
| PROJECT INFORMATION | |||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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GOLD Project ID
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Gp0550527
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Project Name
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Campylobacter coli FDAARGOS_1028
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Other Names
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Legacy GOLD ID
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| NCBI BioProject Name |
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NCBI BioProject Accession
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PRJNA231221 |
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NCBI Locus Tag
|
I6H85
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NCBI BioSample Accession
|
SAMN16357197 |
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| PI | |||||||||||||||||||||||||||||||
| Added By |
JGI automated process
on 2021-03-12 |
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| Last Modified By |
JGI automated process
on 2021-03-19 |
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| Project Comments |
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Project Status
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Complete and Published
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Project Relevance
|
Medical |
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Sequencing Center
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U.S. Food and Drug Administration (FDA)
(USA)
Institute for Genome Sciences, University of Maryland School of Medicine (USA) |
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Collaborating Institute
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Funding Agency
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Project Description
|
Campylobacter coli FDAARGOS_1028 genome sequencing
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| Is JGI Project |
No
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Project Information Visibility
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Public | ||||||||||||||||||||||||||||||
| PROJECT TYPE | |||||||||||||||||||||||||||||||
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Specimen
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Organism |
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Nucleic Acid
|
DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |||||||||||||||||||||||||||||||
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JGI Data Utilization Status
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JGI Award DOI
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Genome Publications
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Other Publications
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Ignored Publications
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Unassigned Publications
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Nature communications
10(1):3313
FDA-ARGOS is a database with public quality-controlled reference genomes for diagnostic use and regulatory science.
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| SRA Experiment |
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| PROJECT COMPOSITION | |||||||||||||||||||||||||||||||
| Study |
Genome sequencing as part of FDA-ARGOS: dAtabase for Regulatory Grade micrObial Sequences project |
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| Organism |
Campylobacter coli FDAARGOS_1028 |
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| Analysis Projects |
Campylobacter coli FDAARGOS_1028 |
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| Number of Analysis Projects (AP) |
1 |
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| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 6: Finished |
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Finishing Goal
|
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Contamination Screening Input
|
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DNA Amplification Method
|
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
|
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Sequencing Technology
(MIGS-29)
|
Illumina Pacbio |
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Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
|
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| GC Percent |
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| Chromosome Count |
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| Plasmid Count |
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0575798 |
| Organism Name |
Campylobacter coli FDAARGOS_1028
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
PROTEOBACTERIA-EPSILON
|
| Genus |
Campylobacter
|
| Genus Synonyms |
|
| Species |
Campylobacter coli
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
FDAARGOS_1028
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
ATCC BAA-1061D-5
|
| Type Strain |
|
| Exemplar DOI |
|
| Exemplar Name |
|
| Taxon DOI |
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
195 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Proteobacteria
|
| NCBI Class |
Epsilonproteobacteria
|
| NCBI Order |
Campylobacterales
|
| NCBI Family |
Campylobacteraceae
|
| NCBI Genus |
Campylobacter
|
| NCBI Species |
Campylobacter coli
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| ISOLATION CLASSIFICATION | |
| Ecosystem |
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| Ecosystem Category |
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| Ecosystem Type |
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| Ecosystem Subtype |
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| Specific Ecosystem |
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
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| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
|
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