PROJECT INFORMATION
GOLD Project ID
Gp0549552  
Project Name
Phytophthora infestans KR_1_A1  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Phytophthora infestans
NCBI BioProject Accession PRJNA592863
NCBI Locus Tag
GN244  
NCBI BioSample Accession SAMN13441166
PI
Added By JGI automated process on 2021-03-12
Last Modified By JGI automated process on 2021-03-15
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Agricultural
Sequencing Center Division of Animal Genomics and Bioinformatics, National Institute of Animal science, Rural Development Administration
Collaborating Institute
  
Funding Agency
  
Project Description
Phytophthora infestans KR_1_A1 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX8159838  (Link to NCBI )
Experiment Title Whole genome sequencing (ONT) of Phytophthora infestans KR1_A1
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name KR1_A1_ONT
Library Layout SINGLE
Library Instrument GRID_ION
 
SRA Experiment Id SRX8159839  (Link to NCBI )
Experiment Title Whole genome sequencing (Illumina) of Phytophthora infestans KR1_A1
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name KR1_A1_SR
Library Layout PAIRED
Library Instrument NEXT_SEQ_550
PROJECT COMPOSITION
Study Phytophthora infestans Genome sequencing and assembly
Organism Phytophthora infestans KR_1_A1
Analysis Projects Phytophthora infestans KR_1_A1
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Draft
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Oxford Nanopore GridION
Illumina HiSeq
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0574827
Organism Name
Phytophthora infestans KR_1_A1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
PROTISTS-STRAMENOPILES  
Genus
Phytophthora  
Genus Synonyms
  
Species
Phytophthora infestans  
Subspecies
  
Species Synonyms
  
Strain
KR_1_A1  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 4787
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
  
NCBI Phylum
Oomycota  
NCBI Class
  
NCBI Order
Peronosporales  
NCBI Family
Peronosporaceae  
NCBI Genus
Phytophthora  
NCBI Species
Phytophthora infestans  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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