PROJECT INFORMATION
GOLD Project ID
Gp0549539  
Project Name
Cafeteria roenbergensis RCC970-E3  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Cafeteria roenbergensis
NCBI BioProject ID 552725
NCBI BioProject Accession PRJNA552725
NCBI Locus Tag
FNF28  
NCBI BioSample Accession SAMN12216700
PI
Added By JGI automated process on 2021-03-12
Last Modified By JGI automated process on 2021-03-15
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Environmental
Sequencing Center Max Planck Institute (Germany)
Collaborating Institute
  
Funding Agency
  
Project Description
Cafeteria roenbergensis RCC970-E3 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX6482058  (Link to NCBI )
Experiment Title PacBio WGS of Cafeteria roenbergensis: strain RCC970-E3
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection size fractionation
Library Name CrRCC970-pb
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX6482057  (Link to NCBI )
Experiment Title Illumina WGS of Cafeteria roenbergensis: strain RCC970-E3
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection size fractionation
Library Name CrRCC970-ms
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
PROJECT COMPOSITION
Study Cafeteria roenbergensis RCC970-E3
Organism Cafeteria roenbergensis RCC970-E3
Analysis Projects Cafeteria roenbergensis RCC970-E3
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Draft
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) PacBio RSII
Illumina MiSeq
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0574814
Organism Name
Cafeteria roenbergensis RCC970-E3  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
PROTISTS-STRAMENOPILES  
Genus
Cafeteria  
Genus Synonyms
  
Species
Cafeteria roenbergensis  
Subspecies
  
Species Synonyms
  
Strain
RCC970-E3  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 33653
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
  
NCBI Phylum
  
NCBI Class
Bigyra  
NCBI Order
Bicosoecida  
NCBI Family
Cafeteriaceae  
NCBI Genus
Cafeteria  
NCBI Species
Cafeteria roenbergensis  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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