PROJECT INFORMATION
GOLD Project ID
Gp0549471  
Project Name
Perkinsus chesapeaki ATCC PRA-425  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Perkinsus chesapeaki isolate:PRA 425
NCBI BioProject ID 554964
NCBI BioProject Accession PRJNA554964
NCBI Locus Tag
FOL47  
NCBI BioSample Accession SAMN12289079
PI
Added By JGI automated process on 2021-03-12
Last Modified By JGI automated process on 2021-03-15
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Agricultural
Sequencing Center Department of Primary Industries, Queensland
Collaborating Institute
  
Funding Agency
  
Project Description
Perkinsus chesapeaki ATCC PRA-425 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX8128255  (Link to NCBI )
Experiment Title Short-read (NextSeq) genome sequencing of Perkinsus olseni PRA-425
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PCHE_PRA425
Library Layout PAIRED
Library Instrument NEXT_SEQ_500
PROJECT COMPOSITION
Study Perkinsus chesapeaki ATCC PRA-425
Organism Perkinsus chesapeaki ATCC PRA-425
Analysis Projects Perkinsus chesapeaki ATCC PRA-425
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Draft
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0574750
Organism Name
Perkinsus chesapeaki ATCC PRA-425  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
PROTISTS-ALVEOLATA  
Genus
Perkinsus  
Genus Synonyms
  
Species
Perkinsus chesapeaki  
Subspecies
  
Species Synonyms
  
Strain
ATCC PRA-425  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
ATCC PRA-425  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 330153
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
  
NCBI Phylum
Perkinsozoa  
NCBI Class
  
NCBI Order
Perkinsida  
NCBI Family
Perkinsidae  
NCBI Genus
Perkinsus  
NCBI Species
Perkinsus chesapeaki  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Unclassified  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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