Studies
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56,335 |
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Biosamples
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196,988 |
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Sequencing Projects
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525,361 |
|
Analysis Projects
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384,993 |
| Organisms | 484,222 |
| PROJECT INFORMATION | |||||||||||||||||||
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GOLD Project ID
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Gp0549436
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Project Name
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Desulfovibrio sp. HN2
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Other Names
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Legacy GOLD ID
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| NCBI BioProject Name | Desulfovibrio psychrotolerans DSM 19430 strain:JS1T | ||||||||||||||||||
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NCBI BioProject Accession
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PRJDB9471 |
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NCBI Locus Tag
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HUV30
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NCBI BioSample Accession
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SAMD00212906 |
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Source Sample ID
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| PI | Unknown | ||||||||||||||||||
| Added By | JGI automated process on 2021-03-12 | ||||||||||||||||||
| Last Modified By | |||||||||||||||||||
| Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Environmental |
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Sequencing Center
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Horonobe Research Institute for the Subsurface Environment (H-RISE), Northern Advancement Centre for Science and Technology (NOASTEC)
(Japan)
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Collaborating Institute
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Funding Agency
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Project Description
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Desulfovibrio sp. HN2 genome sequencing
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| Is JGI Project |
No
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Project Information Visibility
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Public | ||||||||||||||||||
| PROJECT TYPE | |||||||||||||||||||
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |||||||||||||||||||
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JGI Data Utilization Status
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JGI Award DOI
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Genome Publications
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International journal of systematic and evolutionary microbiology: sp. nov., a mesophilic sulfate-reducing deltaproteobacterium isolated from a deep siliceous mudstone formation. PubMed: 33588983 DOI: 10.1099/ijsem.0.004683 |
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Other Publications
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Ignored Publications
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Unassigned Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |||||||||||||||||||
| Study |
Draft genome sequences of 2 bacterial isolates in the genus Desulfovibrio. |
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| Organism |
Desulfovibrio sp. HN2 |
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| Analysis Projects |
Desulfovibrio sp. HN2 |
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| Number of Analysis Projects (AP) |
1 |
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| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
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Complete |
| Sequencing Quality (MIGS-31) |
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Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
|
Illumina HiSeq 2500 platform |
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Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0574716 |
| Organism Name |
Desulfovibrio sp. HN2
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
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| Phylogeny |
PROTEOBACTERIA-DELTA
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| Genus |
Desulfovibrio
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| Genus Synonyms |
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| Species |
Desulfovibrio sp. HN2
|
| Subspecies |
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| Species Synonyms |
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| Strain |
HN2
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| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
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| Type Strain |
Yes
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| Exemplar DOI |
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| Exemplar Name |
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| Taxon DOI |
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| Biosafety Level |
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| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
2718620 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Thermodesulfobacteriota
|
| NCBI Class |
Desulfovibrionia
|
| NCBI Order |
Desulfovibrionales
|
| NCBI Family |
Desulfovibrionaceae
|
| NCBI Genus |
Desulfovibrio
|
| NCBI Species |
Desulfovibrio subterraneus
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Environmental
|
| Ecosystem Category |
Aquatic
|
| Ecosystem Type |
Unclassified
|
| Ecosystem Subtype |
Unclassified
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
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| Cell Shape |
Vibrio-shaped
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| Motility |
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| Sporulation |
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| Temperature Range |
Mesophile
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| Salinity |
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| pH |
6.3
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
Gram-
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
Water |
| Metabolisms |
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| Phenotypes |
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| Energy Sources |
|
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