Studies
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56,335 |
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Biosamples
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196,988 |
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Sequencing Projects
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525,361 |
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Analysis Projects
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384,993 |
| Organisms | 484,222 |
| PROJECT INFORMATION | |||||||||||||||||||
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GOLD Project ID
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Gp0548290
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Project Name
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Phytophthora fragariae NOV-27
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Other Names
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Legacy GOLD ID
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| NCBI BioProject Name | Phytophthora fragariae and rubi | ||||||||||||||||||
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NCBI BioProject Accession
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PRJNA396163 |
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NCBI Locus Tag
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PF005
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NCBI BioSample Accession
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SAMN07449683 |
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Source Sample ID
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| PI | Unknown | ||||||||||||||||||
| Added By | JGI automated process on 2021-03-12 | ||||||||||||||||||
| Last Modified By | JGI automated process on 2021-03-15 | ||||||||||||||||||
| Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Agricultural |
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Sequencing Center
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National Institute of Animal Biotechnology (NIAB)
(India)
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Collaborating Institute
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Funding Agency
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Project Description
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Phytophthora fragariae NOV-27 genome sequencing
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| Is JGI Project |
No
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Project Information Visibility
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Public | ||||||||||||||||||
| PROJECT TYPE | |||||||||||||||||||
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |||||||||||||||||||
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JGI Data Utilization Status
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JGI Award DOI
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Genome Publications
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Other Publications
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Ignored Publications
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Unassigned Publications
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Frontiers in microbiology: Indicates Pathogenicity Is Associated With Transcriptional Variation in Three Key Races. PubMed: 32351458 DOI: 10.3389/fmicb.2020.00490 |
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| SRA Experiment |
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| PROJECT COMPOSITION | |||||||||||||||||||
| Study |
Isolates of two closely related phytophthora species causing either red core disease on Strawberry (P.fragariae) or Raspberry root rot (P.rubi). Genome sequencing and assembly |
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| Organism |
Phytophthora fragariae NOV-27 |
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| Analysis Projects |
Phytophthora fragariae NOV-27 |
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| Number of Analysis Projects (AP) |
1 |
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| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
|---|---|
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Sequencing Status
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Draft |
| Sequencing Quality (MIGS-31) |
Level 2: High-Quality Draft |
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Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Illumina MiSeq |
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Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0573628 |
| Organism Name |
Phytophthora fragariae NOV-27
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| Other names (alias, synonyms, short names, common names) |
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| Organism Domain |
EUKARYAL
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| Phylogeny |
PROTISTS-STRAMENOPILES
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| Genus |
Phytophthora
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| Genus Synonyms |
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| Species |
Phytophthora fragariae
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| Subspecies |
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| Species Synonyms |
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| Strain |
NOV-27
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| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
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| Type Strain |
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| Exemplar DOI |
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| Exemplar Name |
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| Taxon DOI |
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| Biosafety Level |
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| Organism Comments |
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| Cultured |
Yes
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| Culture Type |
Isolate
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| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
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| NCBI Taxonomy ID |
53985 |
| NCBI Superkingdom |
Eukaryota
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| NCBI Kingdom |
|
| NCBI Phylum |
Oomycota
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| NCBI Class |
|
| NCBI Order |
Peronosporales
|
| NCBI Family |
Peronosporaceae
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| NCBI Genus |
Phytophthora
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| NCBI Species |
Phytophthora fragariae
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| ISOLATION CLASSIFICATION | |
| Ecosystem |
Host-associated
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| Ecosystem Category |
Plants
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| Ecosystem Type |
Roots
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| Ecosystem Subtype |
Unclassified
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| Specific Ecosystem |
Unclassified
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
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| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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