PROJECT INFORMATION
GOLD Project ID
Gp0548290  
Project Name
Phytophthora fragariae NOV-27  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Phytophthora fragariae and rubi
NCBI BioProject Accession PRJNA396163
NCBI Locus Tag
PF005  
NCBI BioSample Accession SAMN07449683
Source Sample ID
PI Unknown
Added By JGI automated process on 2021-03-12
Last Modified By JGI automated process on 2021-03-15
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Agricultural
Sequencing Center National Institute of Animal Biotechnology (NIAB) (India)
Collaborating Institute
  
Funding Agency
  
Project Description
Phytophthora fragariae NOV-27 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications Frontiers in microbiology: Indicates Pathogenicity Is Associated With Transcriptional Variation in Three Key Races.
PubMed: 32351458 DOI: 10.3389/fmicb.2020.00490
SRA Experiment
 
SRA Experiment Id SRX4528658  (Link to NCBI )
Experiment Title DNA-Seq of Phytophthora fragariae isolate NOV-27: Liquid grown mycelium
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name NOV-27_Illumina
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
PROJECT COMPOSITION
Study Isolates of two closely related phytophthora species causing either red core disease on Strawberry (P.fragariae) or Raspberry root rot (P.rubi). Genome sequencing and assembly
Organism Phytophthora fragariae NOV-27
Analysis Projects Phytophthora fragariae NOV-27
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Draft
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina MiSeq
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0573628
Organism Name
Phytophthora fragariae NOV-27  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
PROTISTS-STRAMENOPILES  
Genus
Phytophthora  
Genus Synonyms
  
Species
Phytophthora fragariae  
Subspecies
  
Species Synonyms
  
Strain
NOV-27  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 53985
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
  
NCBI Phylum
Oomycota  
NCBI Class
  
NCBI Order
Peronosporales  
NCBI Family
Peronosporaceae  
NCBI Genus
Phytophthora  
NCBI Species
Phytophthora fragariae  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Roots  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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