Studies
|
52,460 |
|
Biosamples
|
170,231 |
|
Sequencing Projects
|
472,495 |
|
Analysis Projects
|
360,320 |
| Organisms | 460,370 |
| PROJECT INFORMATION | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
GOLD Project ID
|
Gp0546334
|
||||||||||||||||||
|
Project Name
|
Subsaximicrobium wynnwilliamsii G#7(T)
|
||||||||||||||||||
|
Other Names
|
|
||||||||||||||||||
|
Legacy GOLD ID
|
|
||||||||||||||||||
| NCBI BioProject Name | Subsaximicrobium wynnwilliamsii | ||||||||||||||||||
|
NCBI BioProject Accession
|
PRJNA516274 |
||||||||||||||||||
|
NCBI Locus Tag
|
ESY88
|
||||||||||||||||||
|
NCBI BioSample Accession
|
SAMN10785758 |
||||||||||||||||||
| PI | |||||||||||||||||||
| Added By |
JGI automated process
on 2021-03-12 |
||||||||||||||||||
| Last Modified By | |||||||||||||||||||
| Project Comments |
|
||||||||||||||||||
|
Project Status
|
Permanent Draft
|
||||||||||||||||||
|
Project Relevance
|
Environmental |
||||||||||||||||||
|
Sequencing Center
|
University of Tasmania
(Australia)
|
||||||||||||||||||
|
Collaborating Institute
|
|
||||||||||||||||||
|
Funding Agency
|
|
||||||||||||||||||
|
Project Description
|
Subsaximicrobium wynnwilliamsii G#7(T) genome sequencing
|
||||||||||||||||||
| Is JGI Project |
No
|
||||||||||||||||||
|
Project Information Visibility
|
Public | ||||||||||||||||||
| PROJECT TYPE | |||||||||||||||||||
|
Specimen
|
Organism |
||||||||||||||||||
|
Nucleic Acid
|
DNA |
||||||||||||||||||
|
Sequencing Strategy
|
Whole Genome Sequencing
|
||||||||||||||||||
| EXTERNAL PROJECT LINKS | |||||||||||||||||||
|
JGI Data Utilization Status
|
|
||||||||||||||||||
|
JGI Award DOI
|
|
||||||||||||||||||
|
Genome Publications
|
|
||||||||||||||||||
|
Other Publications
|
|
||||||||||||||||||
|
Ignored Publications
|
|
||||||||||||||||||
|
Unassigned Publications
|
International Journal of Systematic and Evolutionary Microbiology
55(Pt 4):1471-1486
Novel members of the family Flavobacteriaceae from Antarctic maritime habitats including Subsaximicrobium wynnwilliamsii gen. nov., sp. nov., Subsaximicrobium saxinquilinus sp. nov., Subsaxibacter broadyi gen. nov., sp. nov., Lacinutrix copepodicola gen. nov., sp. nov., and novel species of the genera Bizionia, Gelidibacter and Gillisia.
|
||||||||||||||||||
| SRA Experiment |
|
||||||||||||||||||
| PROJECT COMPOSITION | |||||||||||||||||||
| Study |
Subsaximicrobium wynnwilliamsii Genome sequencing and assembly |
||||||||||||||||||
| Organism |
Subsaximicrobium wynnwilliamsii G#7(T) |
||||||||||||||||||
| Analysis Projects |
Subsaximicrobium wynnwilliamsii G#7(T) |
||||||||||||||||||
| Number of Analysis Projects (AP) |
1 |
||||||||||||||||||
| Number of Derived Analyis Projects (DAP) |
0
|
||||||||||||||||||
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
|
|
Finishing Goal
|
|
|
Contamination Screening Input
|
|
|
DNA Amplification Method
|
|
|
Single Cell Lysis Protocol
|
|
|
Single Cell Lysis Approach
|
|
|
Sequencing Comments
|
|
|
DNA Amplification Kit
|
|
|
Sequencing Technology
(MIGS-29)
|
Illumina HiSeq |
|
Library Method
(MIGS-28)
|
|
|
Library Layout
|
|
|
Library Screening Method
|
|
|
Number Of Reads
|
|
|
Read Size
|
|
|
Vector
|
|
| GC Percent |
|
| Chromosome Count |
|
| Plasmid Count |
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0571853 |
| Organism Name |
Subsaximicrobium wynnwilliamsii G#7(T)
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
BACTEROIDETES
|
| Genus |
Subsaximicrobium
|
| Genus Synonyms |
|
| Species |
Subsaximicrobium wynnwilliamsii
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
G#7(T)
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
|
| Type Strain |
|
| Exemplar DOI |
|
| Exemplar Name |
|
| Taxon DOI |
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
291179 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Bacteroidetes
|
| NCBI Class |
Flavobacteriia
|
| NCBI Order |
Flavobacteriales
|
| NCBI Family |
Flavobacteriaceae
|
| NCBI Genus |
Subsaximicrobium
|
| NCBI Species |
Subsaximicrobium wynnwilliamsii
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
|
| Ecosystem Category |
|
| Ecosystem Type |
|
| Ecosystem Subtype |
|
| Specific Ecosystem |
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
|
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
|
| Cell Shape |
|
| Motility |
|
| Sporulation |
|
| Temperature Range |
|
| Salinity |
|
| pH |
|
| Cell Diameter |
|
| Cell Length |
|
| Color |
|
| Gram Staining |
|
| Biotic Relationships |
|
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
|
| Diseases |
|
| Known Habitats |
|
| Metabolisms |
|
| Phenotypes |
|
| Energy Sources |
|
You are going to add the following user to your project, biosample and study.
Contact Name/Email: Do you want to continue?
You are going to remove permissions for the following user to your project, biosample and study.
Contact Name/Email: Do you want to continue?
Changing the SP visibility will also change visibility on the following items:
Do you want to continue with this visibility change?
Checking that this Sequencing Project can be made private:
Do you want to continue with this visibility change?
Changing the SP Sequencing Strategy will also effect these items:
Do you want to continue with this Sequencing Strategy change?
