PROJECT INFORMATION
GOLD Project ID
Gp0546311  
Project Name
Collinsella aerofaciens ATCC 25986  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Collinsella aerofaciens strain:JCM10188
NCBI BioProject ID 603246
NCBI BioProject Accession PRJNA603246
NCBI Locus Tag
GXM19  
NCBI BioSample Accession SAMN13925608
PI
Added By JGI automated process on 2021-03-12
Last Modified By JGI automated process on 2021-03-12
Project Comments
  
Project Status
Complete and Published  
Project Relevance Medical
Sequencing Center National Institute of Advanced Industrial Science and Technology (AIST)
Collaborating Institute
  
Funding Agency
  
Project Description
Collinsella aerofaciens ATCC 25986 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX7634093  (Link to NCBI )
Experiment Title short read shotgun sequencing of Collinsella aerofaciens strain JCM10188
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name SAMN13925608_shortReads
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
 
SRA Experiment Id SRX7634090  (Link to NCBI )
Experiment Title long read shotgun sequencing of Collinsella aerofaciens strain JCM10188
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name SAMN13925608_longReads
Library Layout SINGLE
Library Instrument MIN_ION
PROJECT COMPOSITION
Study Collinsella aerofaciens ATCC 25986
Organism Collinsella aerofaciens ATCC 25986
Analysis Projects Collinsella aerofaciens ATCC 25986
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina MiSeq (V2 chemistry, 2x251 bp
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0000880
Organism Name
Collinsella aerofaciens ATCC 25986  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Collinsella  
Genus Synonyms
  
Species
Collinsella aerofaciens  
Subspecies
  
Species Synonyms
  
Strain
ATCC 25986  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
ATCC 25986  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.4231  
Exemplar Name
Collinsella aerofaciens  
Taxon DOI
10.1601/tx.5746  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 411903
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Coriobacteriia  
NCBI Order
Coriobacteriales  
NCBI Family
Coriobacteriaceae  
NCBI Genus
Collinsella  
NCBI Species
Collinsella aerofaciens  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Large intestine  
Specific Ecosystem
Fecal  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID AB011816
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Human intestinal microflora
Host
Gastrointestinal tract
Feces
Metabolisms
  
Phenotypes Non-Pathogen
Energy Sources
  

 

 

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