Studies
|
56,336 |
|
Biosamples
|
196,965 |
|
Sequencing Projects
|
525,338 |
|
Analysis Projects
|
385,100 |
| Organisms | 484,220 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0546262
|
|
Project Name
|
Rathayibacter toxicus FH232
|
|
Other Names
|
|
|
Legacy GOLD ID
|
|
| NCBI BioProject Name | Rathayibacter |
|
NCBI BioProject Accession
|
PRJNA312185 |
|
NCBI Locus Tag
|
BSG36
|
|
NCBI BioSample Accession
|
SAMN06040670 |
|
Source Sample ID
|
|
| PI | Unknown |
| Added By | JGI automated process on 2021-03-12 |
| Last Modified By | JGI automated process on 2021-03-12 |
| Project Comments |
|
|
Project Status
|
Complete and Published
|
|
Project Relevance
|
Agricultural |
|
Sequencing Center
|
US Department of Agriculture
(USA)
|
|
Collaborating Institute
|
|
|
Funding Agency
|
|
|
Project Description
|
Rathayibacter toxicus FH232 genome sequencing
|
| Is JGI Project |
No
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
JGI Data Utilization Status
|
|
|
JGI Award DOI
|
|
|
Genome Publications
|
PloS one: 12(8):e0183005 Whole genome sequence of two Rathayibacter toxicus strains reveals a tunicamycin biosynthetic cluster similar to Streptomyces chartreusis. PubMed: 28796837 DOI: 10.1371/journal.pone.0183005 |
|
Other Publications
|
|
|
Ignored Publications
|
|
|
Unassigned Publications
|
|
| SRA Experiment |
|
| PROJECT COMPOSITION | |
| Study |
Several species in the genus Rathayibacter |
| Organism |
Rathayibacter toxicus FH232 |
| Analysis Projects |
Rathayibacter toxicus FH232 |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 6: Finished |
|
Finishing Goal
|
|
|
Contamination Screening Input
|
|
|
DNA Amplification Method
|
|
|
Single Cell Lysis Protocol
|
|
|
Single Cell Lysis Approach
|
|
|
Sequencing Comments
|
|
|
DNA Amplification Kit
|
|
|
Sequencing Technology
(MIGS-29)
|
454 |
|
Library Method
(MIGS-28)
|
|
|
Library Layout
|
|
|
Library Screening Method
|
|
|
Number Of Reads
|
|
|
Read Size
|
|
|
Vector
|
|
| GC Percent |
|
| Chromosome Count |
|
| Plasmid Count |
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0571788 |
| Organism Name |
Rathayibacter toxicus FH232
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
ACTINOMYCETOTA
|
| Genus |
Rathayibacter
|
| Genus Synonyms |
|
| Species |
Rathayibacter toxicus
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
FH232
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
|
| Type Strain |
|
| Exemplar DOI |
|
| Exemplar Name |
|
| Taxon DOI |
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
145458 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Actinomycetota
|
| NCBI Class |
Actinomycetes
|
| NCBI Order |
Micrococcales
|
| NCBI Family |
Microbacteriaceae
|
| NCBI Genus |
Rathayibacter
|
| NCBI Species |
Rathayibacter toxicus
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Host-associated
|
| Ecosystem Category |
Plants
|
| Ecosystem Type |
Unclassified
|
| Ecosystem Subtype |
Unclassified
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
|
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
|
| Cell Shape |
|
| Motility |
|
| Sporulation |
|
| Temperature Range |
|
| Salinity |
|
| pH |
|
| Cell Diameter |
|
| Cell Length |
|
| Color |
|
| Gram Staining |
|
| Biotic Relationships |
|
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
|
| Diseases |
|
| Known Habitats |
|
| Metabolisms |
|
| Phenotypes |
|
| Energy Sources |
|
You are going to add the following user to your project, biosample and study.
Contact Name/Email: Do you want to continue?
You are going to remove permissions for the following user to your project, biosample and study.
Contact Name/Email: Do you want to continue?
Changing the SP visibility will also change visibility on the following items:
Do you want to continue with this visibility change?
Checking that this Sequencing Project can be made private:
Do you want to continue with this visibility change?
Changing the SP Sequencing Strategy will also effect these items:
Do you want to continue with this Sequencing Strategy change?
